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PDBsum entry 5mmj
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protein dna_rna metals Protein-protein interface(s) links
Ribosome PDB id
5mmj

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
11 a.a.
174 a.a.
233 a.a.
216 a.a.
199 a.a.
187 a.a.
113 a.a.
154 a.a.
133 a.a.
144 a.a.
99 a.a.
117 a.a.
122 a.a.
110 a.a.
99 a.a.
75 a.a.
80 a.a.
86 a.a.
60 a.a.
78 a.a.
107 a.a.
65 a.a.
80 a.a.
82 a.a.
40 a.a.
116 a.a.
DNA/RNA
Metals
_MG ×185
PDB id:
5mmj
Name: Ribosome
Title: Structure of the small subunit of the chloroplast ribosome
Structure: 50s ribosomal protein l31. Chain: 0. Synonym: plastid ribosomal protein bl31c. Plastid ribosomal protein bs1c. Chain: 8. Other_details: residues were built as poly-alanine and deposited as unk.. 16s ribosomal RNA. Chain: a.
Source: Spinacia oleracea. Spinach. Organism_taxid: 3562. Organism_taxid: 3562
Authors: P.Bieri,M.Leibundgut,M.Saurer,D.Boehringer,N.Ban
Key ref: P.Bieri et al. (2017). The complete structure of the chloroplast 70S ribosome in complex with translation factor pY. Embo J, 36, 475-486. PubMed id: 28007896 DOI: 10.15252/embj.201695959
Date:
10-Dec-16     Release date:   11-Jan-17    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P82249  (RK31_SPIOL) -  Large ribosomal subunit protein bL31c from Spinacia oleracea
Seq:
Struc: 		130 a.a.
11 a.a.
Protein chain
No UniProt id for this chain
Struc: 174 a.a.
Protein chain
Pfam   ArchSchema ?
P08242  (RR2_SPIOL) -  Small ribosomal subunit protein uS2c from Spinacia oleracea
Seq:
Struc: 		236 a.a.
233 a.a.
Protein chain
Pfam   ArchSchema ?
P09595  (RR3_SPIOL) -  Small ribosomal subunit protein uS3c from Spinacia oleracea
Seq:
Struc: 		218 a.a.
216 a.a.
Protein chain
Pfam   ArchSchema ?
P13788  (RR4_SPIOL) -  Small ribosomal subunit protein uS4c from Spinacia oleracea
Seq:
Struc: 		201 a.a.
199 a.a.
Protein chain
Pfam   ArchSchema ?
Q9ST69  (RR5_SPIOL) -  Small ribosomal subunit protein uS5c from Spinacia oleracea
Seq:
Struc: 		308 a.a.
187 a.a.
Protein chain
Pfam   ArchSchema ?
P82403  (RR6_SPIOL) -  Small ribosomal subunit protein bS6c alpha from Spinacia oleracea
Seq:
Struc: 		211 a.a.
113 a.a.
Protein chain
Pfam   ArchSchema ?
P82129  (RR7_SPIOL) -  Small ribosomal subunit protein uS7cz/uS7cy from Spinacia oleracea
Seq:
Struc: 		155 a.a.
154 a.a.
Protein chain
Pfam   ArchSchema ?
P09597  (RR8_SPIOL) -  Small ribosomal subunit protein uS8c from Spinacia oleracea
Seq:
Struc: 		134 a.a.
133 a.a.
Protein chain
Pfam   ArchSchema ?
P82278  (RR9_SPIOL) -  Small ribosomal subunit protein uS9c from Spinacia oleracea
Seq:
Struc: 		208 a.a.
144 a.a.
Protein chain
Pfam   ArchSchema ?
P82162  (RR10_SPIOL) -  Small ribosomal subunit protein uS10c from Spinacia oleracea
Seq:
Struc: 		195 a.a.
99 a.a.
Protein chain
Pfam   ArchSchema ?
P06506  (RR11_SPIOL) -  Small ribosomal subunit protein uS11c from Spinacia oleracea
Seq:
Struc: 		138 a.a.
117 a.a.
Protein chain
Pfam   ArchSchema ?
P62128  (RR12_SPIOL) -  Small ribosomal subunit protein uS12cz/uS12cy from Spinacia oleracea
Seq:
Struc: 		123 a.a.
122 a.a.
Protein chain
Pfam   ArchSchema ?
P82163  (RR13_SPIOL) -  Small ribosomal subunit protein uS13c from Spinacia oleracea
Seq:
Struc: 		172 a.a.
110 a.a.
Protein chain
Pfam   ArchSchema ?
P06507  (RR14_SPIOL) -  Small ribosomal subunit protein uS14c from Spinacia oleracea
Seq:
Struc: 		100 a.a.
99 a.a.
Protein chain
Pfam   ArchSchema ?
Q9M3I4  (RR15_SPIOL) -  Small ribosomal subunit protein uS15c from Spinacia oleracea
Seq:
Struc: 		90 a.a.
75 a.a.
Protein chain
Pfam   ArchSchema ?
P28807  (RR16_SPIOL) -  Small ribosomal subunit protein bS16c from Spinacia oleracea
Seq:
Struc: 		88 a.a.
80 a.a.
Protein chain
Pfam   ArchSchema ?
P82137  (RR17_SPIOL) -  Small ribosomal subunit protein uS17c from Spinacia oleracea
Seq:
Struc: 		165 a.a.
86 a.a.
Protein chain
Pfam   ArchSchema ?
Q9M3K7  (RR18_SPIOL) -  Small ribosomal subunit protein bS18c from Spinacia oleracea
Seq:
Struc: 		101 a.a.
60 a.a.
Protein chain
Pfam   ArchSchema ?
P06508  (RR19_SPIOL) -  Small ribosomal subunit protein uS19c from Spinacia oleracea
Seq:
Struc: 		92 a.a.
78 a.a.
Protein chain
No UniProt id for this chain
Struc: 107 a.a.
Protein chain
Pfam   ArchSchema ?
P82024  (RR21_SPIOL) -  Small ribosomal subunit protein bS21c from Spinacia oleracea
Seq:
Struc: 		180 a.a.
65 a.a.
Protein chain
Pfam   ArchSchema ?
P82277  (RRP2_SPIOL) -  Small ribosomal subunit protein cS22 from Spinacia oleracea
Seq:
Struc: 		260 a.a.
80 a.a.
Protein chain
Pfam   ArchSchema ?
P82412  (RRP3_SPIOL) -  Small ribosomal subunit protein cS23 from Spinacia oleracea
Seq:
Struc: 		179 a.a.
82 a.a.
Protein chain
Pfam   ArchSchema ?
P47910  (RR31_SPIOL) -  Small ribosomal subunit protein bTHXc from Spinacia oleracea
Seq:
Struc: 		101 a.a.
40 a.a.
Protein chain
Pfam   ArchSchema ?
P19954  (PRSP1_SPIOL) -  Ribosome-binding factor PSRP1, chloroplastic from Spinacia oleracea
Seq:
Struc: 		302 a.a.
116 a.a.
Key:    PfamA domain  Secondary structure

DNA/RNA chain
  U-C-U-C-A-U-G-G-A-G-A-G-U-U-C-G-A-U-C-C-U-G-G-C-U-C-A-G-G-A-U-G-A-A-C-G-C-U-G- ... 1484 bases

 Enzyme reactions 
   Enzyme class: Chains 0, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, u, v, w, x, y: E.C.?
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

 

 
DOI no: 10.15252/embj.201695959 Embo J 36:475-486 (2017)
PubMed id: 28007896  
 
 
The complete structure of the chloroplast 70S ribosome in complex with translation factor pY.
P.Bieri, M.Leibundgut, M.Saurer, D.Boehringer, N.Ban.
 
  ABSTRACT  
 
No abstract given.

 

 

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