PDBsum entry 5e6q

Protein binding

PDB id: 5e6q

Contents

Protein chains

425 a.a.

14 a.a.

Ligands

SO4

GOL

Metals

_CL ×2

Waters ×228

PDB id:

5e6q

Name:

Protein binding

Title:

Importin alpha binding to xrcc1 nls peptide

Structure:

Importin subunit alpha-1. Chain: b. Synonym: importin alpha p1,karyopherin subunit alpha-2,pendulin,pore targeting complex 58 kda subunit,ptac58,rag cohort protein 1,srp1- alpha. Engineered: yes. DNA repair protein xrcc1 nls peptide. Chain: a. Fragment: unp residues 241-276.

Source:

Mus musculus. Mouse. Organism_taxid: 10090. Gene: kpna2, rch1. Expressed in: escherichia coli. Expression_system_taxid: 562. Synthetic: yes. Homo sapiens. Human.

Resolution:

2.31Å R-factor: 0.175 R-free: 0.208

Authors:

L.C.Pedersen,T.W.Kirby,N.R.Gassman,C.E.Smith,S.A.Gabel,M.Sobhany, S.H.Wilson,R.E.London

Key ref:

T.W.Kirby et al. (2015). Nuclear Localization of the DNA Repair Scaffold XRCC1: Uncovering the Functional Role of a Bipartite NLS. Sci Rep, 5, 13405. PubMed id: 26304019 DOI: 10.1038/srep13405

Date:

10-Oct-15 Release date: 28-Oct-15

Protein chain

P52293  (IMA1_MOUSE) -  Importin subunit alpha-1 from Mus musculus

Seq: 529 a.a.

Struc: 425 a.a.

Protein chain

P18887  (XRCC1_HUMAN) -  DNA repair protein XRCC1 from Homo sapiens

Seq: 633 a.a.

Struc: 14 a.a.*

* PDB and UniProt seqs differ at 5 residue positions (black crosses)

DOI no: 10.1038/srep13405

Sci Rep 5:13405 (2015)

PubMed id: 26304019

Nuclear Localization of the DNA Repair Scaffold XRCC1: Uncovering the Functional Role of a Bipartite NLS.

T.W.Kirby, N.R.Gassman, C.E.Smith, L.C.Pedersen, S.A.Gabel, M.Sobhany, S.H.Wilson, R.E.London.

ABSTRACT

We have characterized the nuclear localization signal (NLS) of XRCC1 structurally using X-ray crystallography and functionally using fluorescence imaging. Crystallography and binding studies confirm the bipartite nature of the XRCC1 NLS interaction with Importin α (Impα) in which the major and minor binding motifs are separated by >20 residues, and resolve previous inconsistent determinations. Binding studies of peptides corresponding to the bipartite NLS, as well as its major and minor binding motifs, to both wild-type and mutated forms of Impα reveal pronounced cooperative binding behavior that is generated by the proximity effect of the tethered major and minor motifs of the NLS. The cooperativity stems from the increased local concentration of the second motif near its cognate binding site that is a consequence of the stepwise binding behavior of the bipartite NLS. We predict that the stepwise dissociation of the NLS from Impα facilitates unloading by providing a partially complexed intermediate that is available for competitive binding by Nup50 or the Importin β binding domain. This behavior provides a basis for meeting the intrinsically conflicting high affinity and high flux requirements of an efficient nuclear transport system.