PDBsum entry 4z90

Transport protein

PDB id: 4z90

Contents

Protein chains

(+ 4 more) 309 a.a.

Ligands

4LE ×4

MES ×10

Waters ×420

PDB id:

4z90

Name:

Transport protein

Title:

Elic bound with the anesthetic isoflurane in the resting state

Structure:

Gamma-aminobutyric-acid receptor subunit beta-1. Chain: a, b, c, d, e, f, g, h, i, j. Engineered: yes

Source:

Dickeya dadantii (strain 3937). Organism_taxid: 198628. Strain: 3937. Gene: dda3937_00520. Expressed in: escherichia coli. Expression_system_taxid: 562.

Resolution:

3.00Å R-factor: 0.211 R-free: 0.243

Authors:

Q.Chen,M.Kinde,P.Arjunan,A.Cohen,Y.Xu,P.Tang

Key ref:

Q.Chen et al. (2015). Direct Pore Binding as a Mechanism for Isoflurane Inhibition of the Pentameric Ligand-gated Ion Channel ELIC. Sci Rep, 5, 13833. PubMed id: 26346220 DOI: 10.1038/srep13833

Date:

09-Apr-15 Release date: 16-Sep-15

Protein chains

E0SJQ4  (E0SJQ4_DICD3) -  Gamma-aminobutyric-acid receptor subunit beta-1 from Dickeya dadantii (strain 3937)

Seq: 343 a.a.

Struc: 309 a.a.

DOI no: 10.1038/srep13833

Sci Rep 5:13833 (2015)

PubMed id: 26346220

Direct Pore Binding as a Mechanism for Isoflurane Inhibition of the Pentameric Ligand-gated Ion Channel ELIC.

Q.Chen, M.N.Kinde, P.Arjunan, M.M.Wells, A.E.Cohen, Y.Xu, P.Tang.

ABSTRACT

Pentameric ligand-gated ion channels (pLGICs) are targets of general anesthetics, but molecular mechanisms underlying anesthetic action remain debatable. We found that ELIC, a pLGIC from Erwinia chrysanthemi, can be functionally inhibited by isoflurane and other anesthetics. Structures of ELIC co-crystallized with isoflurane in the absence or presence of an agonist revealed double isoflurane occupancies inside the pore near T237(6') and A244(13'). A pore-radius contraction near the extracellular entrance was observed upon isoflurane binding. Electrophysiology measurements with a single-point mutation at position 6' or 13' support the notion that binding at these sites renders isoflurane inhibition. Molecular dynamics simulations suggested that isoflurane binding was more stable in the resting than in a desensitized pore conformation. This study presents compelling evidence for a direct pore-binding mechanism of isoflurane inhibition, which has a general implication for inhibitory action of general anesthetics on pLGICs.