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PDBsum entry 4y9c

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protein ligands metals Protein-protein interface(s) links
Transport protein/inhibitor PDB id
4y9c

 

 

 

 

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Contents
Protein chains
115 a.a.
Ligands
MKS ×2
Metals
_BR ×6
Waters ×173
PDB id:
4y9c
Name: Transport protein/inhibitor
Title: Crystal structure of v30m mutated transthyretin with bromide in complex with alpha-mangostin
Structure: Transthyretin. Chain: a, b. Synonym: attr,prealbumin,tbpa. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: ttr, palb. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
1.49Å     R-factor:   0.206     R-free:   0.240
Authors: T.Yokoyama,M.Mizuguchi
Key ref: T.Yokoyama et al. (2015). Discovery of γ-Mangostin as an Amyloidogenesis Inhibitor. Sci Rep, 5, 13570. PubMed id: 26310724 DOI: 10.1038/srep13570
Date:
17-Feb-15     Release date:   09-Sep-15    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P02766  (TTHY_HUMAN) -  Transthyretin from Homo sapiens
Seq:
Struc:
147 a.a.
115 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 

 
DOI no: 10.1038/srep13570 Sci Rep 5:13570 (2015)
PubMed id: 26310724  
 
 
Discovery of γ-Mangostin as an Amyloidogenesis Inhibitor.
T.Yokoyama, M.Ueda, Y.Ando, M.Mizuguchi.
 
  ABSTRACT  
 
Transthyretin (TTR) is a homotetrameric protein involved in human hereditary amyloidoses. The discovery and development of small molecules that inhibit the amyloid fibril formation of TTR is one of the therapeutic strategies for these diseases. Herein, we discovered that γ-mangostin (γ-M) is an effective inhibitor against the amyloid fibril formation of V30M amyloidogenic TTR. In-vitro binding assays revealed that γ-M was the most potent of the selected xanthone derivatives, and it bound to the thyroxine (T4)-binding sites and stabilized the TTR tetramer. X-ray crystallographic analysis revealed the diagonal binding mode of γ-M and the two binding sites of chloride ions at the T4-binding site. One of the chloride ions was replaced with a water molecule in the α-mangostin complex, which is a methylated derivative of γ-M. The stronger inhibitory potency of γ-M could be explained by the additional hydrogen bonds with the chloride ion. The present study establishes γ-M as a novel inhibitor of TTR fibrillization.
 

 

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