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PDBsum entry 4xlv

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protein ligands metals links
Transferase PDB id
4xlv

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
310 a.a.
Ligands
ACP
Metals
_MG ×2
Waters ×141
PDB id:
4xlv
Name: Transferase
Title: Crystal structure of the activated insulin receptor tyrosine kinase dimer
Structure: Insulin receptor. Chain: a. Fragment: unp residues 983-1310. Synonym: ir. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: insr. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108.
Resolution:
2.30Å     R-factor:   0.207     R-free:   0.266
Authors: S.R.Hubbard,S.Li
Key ref: M.Z.Cabail et al. (2015). The insulin and IGF1 receptor kinase domains are functional dimers in the activated state. Nat Commun, 6, 6406. PubMed id: 25758790 DOI: 10.1038/ncomms7406
Date:
13-Jan-15     Release date:   25-Mar-15    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P06213  (INSR_HUMAN) -  Insulin receptor from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1382 a.a.
310 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
Bound ligand (Het Group name = ACP)
matches with 81.25% similarity
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1038/ncomms7406 Nat Commun 6:6406 (2015)
PubMed id: 25758790  
 
 
The insulin and IGF1 receptor kinase domains are functional dimers in the activated state.
M.Z.Cabail, S.Li, E.Lemmon, M.E.Bowen, S.R.Hubbard, W.T.Miller.
 
  ABSTRACT  
 
The insulin receptor (IR) and insulin-like growth factor-1 receptor (IGF1R) are highly related receptor tyrosine kinases with a disulfide-linked homodimeric architecture. Ligand binding to the receptor ectodomain triggers tyrosine autophosphorylation of the cytoplasmic domains, which stimulates catalytic activity and creates recruitment sites for downstream signalling proteins. Whether the two phosphorylated tyrosine kinase domains within the receptor dimer function independently or cooperatively to phosphorylate protein substrates is not known. Here we provide crystallographic, biophysical and biochemical evidence demonstrating that the phosphorylated kinase domains of IR and IGF1R form a specific dimeric arrangement involving an exchange of the juxtamembrane region proximal to the kinase domain. In this dimer, the active position of α-helix C in the kinase N lobe is stabilized, which promotes downstream substrate phosphorylation. These studies afford a novel strategy for the design of small-molecule IR agonists as potential therapeutic agents for type 2 diabetes.
 

 

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