PDBsum entry 4lft

Toxin

PDB id: 4lft

Contents

Protein chains

64 a.a.

73 a.a.

Waters ×133

PDB id:

4lft

Name:

Toxin

Title:

Structure of alpha-elapitoxin-dpp2d isolated from black mamba (dendroaspis polylepis) venom

Structure:

Alpha-elapitoxin-dpp2a. Chain: a, b. Fragment: unp residues 65-136. Synonym: alpha-eptx-dpp2a, long neurotoxin 1, neurotoxin gamma, toxin vn1

Source:

Dendroaspis polylepis polylepis. Black mamba. Organism_taxid: 8620. Other_details: isolated from crude venom using cation-exchange chromatography and reversed-phase chromatography.

Resolution:

1.70Å R-factor: 0.199 R-free: 0.224

Authors:

C.I.A.Wang,T.Reeks,R.J.Lewis,P.F.Alewood,T.Durek

Key ref:

C.I.Wang et al. (2014). Isolation and structural and pharmacological characterization of α-elapitoxin-Dpp2d, an amidated three finger toxin from black mamba venom. Biochemistry, 53, 3758-3766. PubMed id: 24867092 DOI: 10.1021/bi5004475

Date:

27-Jun-13 Release date: 11-Jun-14

Protein chain

P01396  (3L21_DENPO) -  Alpha-elapitoxin-Dpp2a from Dendroaspis polylepis polylepis

Seq: 72 a.a.

Struc: 64 a.a.*

Protein chain

P01396  (3L21_DENPO) -  Alpha-elapitoxin-Dpp2a from Dendroaspis polylepis polylepis

Seq: 72 a.a.

Struc: 73 a.a.*

* PDB and UniProt seqs differ at 6 residue positions (black crosses)

DOI no: 10.1021/bi5004475

Biochemistry 53:3758-3766 (2014)

PubMed id: 24867092

Isolation and structural and pharmacological characterization of α-elapitoxin-Dpp2d, an amidated three finger toxin from black mamba venom.

C.I.Wang, T.Reeks, I.Vetter, I.Vergara, O.Kovtun, R.J.Lewis, P.F.Alewood, T.Durek.

ABSTRACT

We isolated a novel, atypical long-chain three-finger toxin (TFT), α-elapitoxin-Dpp2d (α-EPTX-Dpp2d), from black mamba (Dendroaspis polylepis polylepis) venom. Proteolytic digestion with trypsin and V8 protease, together with MS/MS de novo sequencing, indicated that the mature toxin has an amidated C-terminal arginine, a posttranslational modification rarely observed for snake TFTs. α-EPTX-Dpp2d was found to potently inhibit α7 neuronal nicotinic acetylcholine receptors (nAChR; IC50, 58 ± 24 nM) and muscle-type nAChR (IC50, 114 ± 37 nM) but did not affect α3β2 and α3β4 nAChR isoforms at 1 μM concentrations. Competitive radioligand binding assays demonstrated that α-EPTX-Dpp2d competes with epibatidine binding to the Lymnea stagnalis acetylcholine-binding protein (Ls-AChBP; IC50, 4.9 ± 2.3 nM). The activity profile and binding data are reminiscent of classical long-chain TFTs with a free carboxyl termini, suggesting that amidation does not significantly affect toxin selectivity. The crystal structure of α-EPTX-Dpp2d was determined at 1.7 Å resolution and displayed a dimeric toxin assembly with each monomer positioned in an antiparallel orientation. The dimeric structure is stabilized by extensive intermolecular hydrogen bonds and electrostatic interactions, which raised the possibility that the toxin may exist as a noncovalent homodimer in solution. However, chemical cross-linking and size-exclusion chromatography coupled with multiangle laser light scattering (MALLS) data indicated that the toxin is predominantly monomeric under physiological conditions. Because of its high potency and selectivity, we expect this toxin to be a valuable pharmacological tool for studying the structure and function of nAChRs.