PDBsum entry 4lfc

Ribosome

PDB id: 4lfc

Contents

Protein chains

236 a.a.

207 a.a.

208 a.a.

151 a.a.

101 a.a.

155 a.a.

138 a.a.

127 a.a.

99 a.a.

119 a.a.

125 a.a.

118 a.a.

60 a.a.

88 a.a.

84 a.a.

104 a.a.

73 a.a.

81 a.a.

99 a.a.

25 a.a.

DNA/RNA

Ligands

TOY

Metals

_MG ×133

__K ×16

_ZN ×2

Waters ×48

PDB id:

4lfc

Name:

Ribosome

Title:

Crystal structure of 30s ribosomal subunit from thermus thermophilus

Structure:

16s rrna. Chain: a. Ribosomal protein s2. Chain: b. Ribosomal protein s3. Chain: c. Ribosomal protein s4. Chain: d. Ribosomal protein s5.

Source:

Thermus thermophilus. Organism_taxid: 300852. Strain: hb8. Strain: hb8

Resolution:

3.60Å R-factor: 0.165 R-free: 0.209

Authors:

H.Demirci,R.Belardinelli,J.Carr,F.Murphy Iv,G.Jogl,A.E.Dahlberg, S.T.Gregory

Key ref:

H.Demirci et al. To be published, .

Date:

26-Jun-13 Release date: 02-Jul-14

Protein chain

P80371  (RS2_THET8) -  Small ribosomal subunit protein uS2 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 256 a.a.

Struc: 236 a.a.

Protein chain

P80372  (RS3_THET8) -  Small ribosomal subunit protein uS3 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 239 a.a.

Struc: 207 a.a.

Protein chain

P80373  (RS4_THET8) -  Small ribosomal subunit protein uS4 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 209 a.a.

Struc: 208 a.a.

Protein chain

Q5SHQ5  (RS5_THET8) -  Small ribosomal subunit protein uS5 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 162 a.a.

Struc: 151 a.a.

Protein chain

Q5SLP8  (RS6_THET8) -  Small ribosomal subunit protein bS6 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 101 a.a.

Struc: 101 a.a.

Protein chain

P17291  (RS7_THET8) -  Small ribosomal subunit protein uS7 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 156 a.a.

Struc: 155 a.a.

Protein chain

No UniProt id for this chain

Struc: 138 a.a.

Protein chain

P80374  (RS9_THET8) -  Small ribosomal subunit protein uS9 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 128 a.a.

Struc: 127 a.a.

Protein chain

Q5SHN7  (RS10_THET8) -  Small ribosomal subunit protein uS10 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 105 a.a.

Struc: 99 a.a.

Protein chain

P80376  (RS11_THET8) -  Small ribosomal subunit protein uS11 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 129 a.a.

Struc: 119 a.a.

Protein chain

F6DEQ7  (F6DEQ7_THETG) -  Small ribosomal subunit protein uS12 from Thermus thermophilus (strain SG0.5JP17-16)

Seq: 135 a.a.

Struc: 125 a.a.*

Protein chain

P80377  (RS13_THET8) -  Small ribosomal subunit protein uS13 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 126 a.a.

Struc: 118 a.a.

Protein chain

No UniProt id for this chain

Struc: 60 a.a.

Protein chain

Q5SJ76  (RS15_THET8) -  Small ribosomal subunit protein uS15 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 89 a.a.

Struc: 88 a.a.

Protein chain

Q5SJH3  (RS16_THET8) -  Small ribosomal subunit protein bS16 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 88 a.a.

Struc: 84 a.a.

Protein chain

No UniProt id for this chain

Struc: 104 a.a.

Protein chain

Q5SLQ0  (RS18_THET8) -  Small ribosomal subunit protein bS18 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 88 a.a.

Struc: 73 a.a.

Protein chain

Q5SHP2  (RS19_THET8) -  Small ribosomal subunit protein uS19 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 93 a.a.

Struc: 81 a.a.

Protein chain

P80380  (RS20_THET8) -  Small ribosomal subunit protein bS20 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 106 a.a.

Struc: 99 a.a.

Protein chain

Q5SIH3  (RSHX_THET8) -  Small ribosomal subunit protein bTHX from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)

Seq: 27 a.a.

Struc: 25 a.a.

* PDB and UniProt seqs differ at 1 residue position (black cross)

DNA/RNA chain

U-G-G-A-G-A-G-U-U-U-G-A-U-C-C-U-G-G-C-U-C-A-G-G-G-U-G-A-A-C-G-C-U-G-G-C-G-G-C- ... 1512 bases