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PDBsum entry 4l4x

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protein ligands links
Oxidoreductase PDB id
4l4x

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
503 a.a.
Ligands
NDP
Waters ×6
PDB id:
4l4x
Name: Oxidoreductase
Title: An a2-type ketoreductase from a modular polyketide synthase
Structure: Amphi. Chain: a. Fragment: dimerization element and ketoreductase, unp residues 4200- 4759. Engineered: yes
Source: Streptomyces nodosus. Organism_taxid: 40318. Gene: amphi. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
2.55Å     R-factor:   0.230     R-free:   0.280
Authors: J.Zheng,A.T.Keatinge-Clay
Key ref: J.Zheng et al. (2013). Structural studies of an A2-type modular polyketide synthase ketoreductase reveal features controlling α-substituent stereochemistry. Acs Chem Biol, 8, 1964-1971. PubMed id: 23755878 DOI: 10.1021/cb400161g
Date:
10-Jun-13     Release date:   19-Jun-13    
Supersedes: 4di7
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q93NX9  (Q93NX9_9ACTN) -  AmphI from Streptomyces nodosus
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9510 a.a.
503 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.1.1.1.100  - 3-oxoacyl-[acyl-carrier-protein] reductase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: a (3R)-hydroxyacyl-[ACP] + NADP+ = a 3-oxoacyl-[ACP] + NADPH + H+
(3R)-hydroxyacyl-[ACP]
+
NADP(+)
Bound ligand (Het Group name = NDP)
corresponds exactly
= 3-oxoacyl-[ACP]
+ NADPH
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1021/cb400161g Acs Chem Biol 8:1964-1971 (2013)
PubMed id: 23755878  
 
 
Structural studies of an A2-type modular polyketide synthase ketoreductase reveal features controlling α-substituent stereochemistry.
J.Zheng, S.K.Piasecki, A.T.Keatinge-Clay.
 
  ABSTRACT  
 
Modular polyketide synthase ketoreductases often set two stereocenters when reducing intermediates in the biosynthesis of a complex polyketide. Here we report the 2.55-Å resolution structure of an A2-type ketoreductase from the 11th module of the amphotericin polyketide synthase that sets a combination of l-α-methyl and l-β-hydroxyl stereochemistries and represents the final catalytically competent ketoreductase type to be structurally elucidated. Through structure-guided mutagenesis a double mutant of an A1-type ketoreductase was generated that functions as an A2-type ketoreductase on a diketide substrate analogue, setting an α-alkyl substituent in an l-orientation rather than in the d-orientation set by the unmutated ketoreductase. When the activity of the double mutant was examined in the context of an engineered triketide lactone synthase, the anticipated triketide lactone was not produced even though the ketoreductase-containing module still reduced the diketide substrate analogue as expected. These findings suggest that re-engineered ketoreductases may be catalytically outcompeted within engineered polyketide synthase assembly lines.
 

 

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