PDBsum entry 4jpr

Viral protein

PDB id: 4jpr

Contents

Protein chain

76 a.a.

Metals

_CL

Waters ×7

PDB id:

4jpr

Name:

Viral protein

Title:

Structure of the aslv fusion subunit core

Structure:

Aslv fusion tm. Chain: a. Synonym: transmembrane protein, tm, glycoprotein 37, gp37. Engineered: yes

Source:

Rous sarcoma virus (strain schmidt-ruppin a). Aslv. Organism_taxid: 269446. Strain: schmidt-ruppin a. Gene: env. Expressed in: escherichia coli. Expression_system_taxid: 469008.

Resolution:

2.00Å R-factor: 0.210 R-free: 0.237

Authors:

H.Aydin,B.M.Smrke,J.E.Lee

Key ref:

H.Aydin et al. (2013). Structural characterization of a fusion glycoprotein from a retrovirus that undergoes a hybrid 2-step entry mechanism. Faseb J, 27, 5059-5071. PubMed id: 24036886 DOI: 10.1096/fj.13-232371

Date:

19-Mar-13 Release date: 02-Oct-13

Protein chain

P03397  (ENV_RSVSA) -

DOI no: 10.1096/fj.13-232371

Faseb J 27:5059-5071 (2013)

PubMed id: 24036886

Structural characterization of a fusion glycoprotein from a retrovirus that undergoes a hybrid 2-step entry mechanism.

H.Aydin, B.M.Smrke, J.E.Lee.

ABSTRACT

Entry of enveloped viruses into host cells is mediated by their surface envelope glycoproteins (Env). On the surface of the virus, Env is in a metastable, prefusion state, primed to catalyze the fusion of the viral and host membranes. An external trigger is needed to promote the drastic conformational changes necessary for the fusion subunit to fold into the low-energy, 6-helix bundle. These triggers typically facilitate pH-independent entry at the plasma membrane or pH-dependent entry in a low-pH endosomal compartment. The α-retrovirus avian sarcoma leukosis virus (ASLV) has a rare, 2-step entry mechanism with both pH-dependent and pH-independent features. Here, we present the 2.0-Å-resolution crystal structure of the ASLV transmembrane (TM) fusion protein. Our structural and biophysical studies indicated that unlike other pH-dependent or pH-independent viral TMs, the ASLV fusion subunit is stable irrespective of pH. Two histidine residues (His490 and His492) in the chain reversal region confer stability at low pH. A structural comparison of class I viral fusion proteins suggests that the presence of a positive charge, either a histidine or arginine amino acid, stabilizes a helical dipole moment and is a signature of fusion proteins active at low pH. The structure now reveals key residues and features that explain its 2-step mechanism, and we discuss the implications of the ASLV TM structure in the context of general mechanisms required for membrane fusion.