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PDBsum entry 4f8b

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protein ligands metals Protein-protein interface(s) links
Oxidoreductase PDB id
4f8b

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
139 a.a.
Ligands
GD1 ×4
PO4
PE4
Metals
_MG ×4
Waters ×165
PDB id:
4f8b
Name: Oxidoreductase
Title: Crystal structure of the covalent thioimide intermediate of unimodular nitrile reductase quef
Structure: NADPH-dependent 7-cyano-7-deazaguanine reductase. Chain: a, b, c, d, e. Synonym: quef, 7-cyano-7-carbaguanine reductase, NADPH-dependent nitrile oxidoreductase, preq(0) reductase. Engineered: yes
Source: Bacillus subtilis subsp. Subtilis. Organism_taxid: 224308. Strain: 168. Gene: bsu13750, quef, ykvm. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
2.50Å     R-factor:   0.193     R-free:   0.272
Authors: B.Stec,M.A.Swairjo
Key ref: V.M.Chikwana et al. (2012). Structural basis of biological nitrile reduction. J Biol Chem, 287, 30560-30570. PubMed id: 22787148
Date:
17-May-12     Release date:   11-Jul-12    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
O31678  (QUEF_BACSU) -  NADPH-dependent 7-cyano-7-deazaguanine reductase from Bacillus subtilis (strain 168)
Seq:
Struc:
165 a.a.
139 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.1.7.1.13  - preQ1 synthase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: 7-aminomethyl-7-carbaguanine + 2 NADP+ = 7-cyano-7-deazaguanine + 2 NADPH + 3 H+
7-aminomethyl-7-carbaguanine
Bound ligand (Het Group name = GD1)
corresponds exactly
+ 2 × NADP(+)
= 7-cyano-7-deazaguanine
+ 2 × NADPH
+ 3 × H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
J Biol Chem 287:30560-30570 (2012)
PubMed id: 22787148  
 
 
Structural basis of biological nitrile reduction.
V.M.Chikwana, B.Stec, B.W.Lee, V.de Crécy-Lagard, D.Iwata-Reuyl, M.A.Swairjo.
 
  ABSTRACT  
 
No abstract given.

 

 

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