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PDBsum entry 4ex4

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protein ligands metals Protein-protein interface(s) links
Transferase PDB id
4ex4

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
684 a.a.
721 a.a.
Ligands
EDO
Metals
_MG ×6
Waters ×866
PDB id:
4ex4
Name: Transferase
Title: The structure of glcb from mycobacterium leprae
Structure: Malate synthase g. Chain: a, b. Engineered: yes
Source: Mycobacterium leprae. Organism_taxid: 561304. Strain: br4923. Gene: glcb, ml2069, mlbr02069, mlcb1788.27. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
2.10Å     R-factor:   0.183     R-free:   0.234
Authors: Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Key ref: M.C.Clifton et al. The structure of glcb from mycobacterium leprae. To be published, .
Date:
29-Apr-12     Release date:   23-May-12    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
B8ZSN3  (MASZ_MYCLB) -  Malate synthase G from Mycobacterium leprae (strain Br4923)
Seq:
Struc:
 
Seq:
Struc:
731 a.a.
684 a.a.*
Protein chain
Pfam   ArchSchema ?
B8ZSN3  (MASZ_MYCLB) -  Malate synthase G from Mycobacterium leprae (strain Br4923)
Seq:
Struc:
 
Seq:
Struc:
731 a.a.
721 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: Chains A, B: E.C.2.3.3.9  - malate synthase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Glyoxylate Cycle
      Reaction: glyoxylate + acetyl-CoA + H2O = (S)-malate + CoA + H+
glyoxylate
+
acetyl-CoA
Bound ligand (Het Group name = EDO)
matches with 80.00% similarity
+ H2O
= (S)-malate
+ CoA
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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