PDBsum entry 4l6r

Membrane protein

PDB id: 4l6r

Contents

Protein chain

398 a.a.

Ligands

PEG

PDB id:

4l6r

Name:

Membrane protein

Title:

Structure of the class b human glucagon g protein coupled receptor

Structure:

Soluble cytochrome b562 and glucagon receptor chimera. Chain: a. Fragment: unp residues 23-128 and 123-434. Synonym: cytochrome b-562, gl-r. Engineered: yes. Mutation: yes

Source:

Escherichia coli, homo sapiens. Human. Organism_taxid: 562, 9606. Gene: cybc, gcgr_human, gcgr. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108.

Resolution:

3.30Å R-factor: 0.286 R-free: 0.339

Authors:

F.Y.Siu,M.He,C.De Graaf,G.W.Han,D.Yang,Z.Zhang,C.Zhou,Q.Xu,D.Wacker, J.S.Joseph,W.Liu,J.Lau,V.Cherezov,V.Katritch,M.W.Wang,R.C.Stevens, Gpcr Network (Gpcr)

Key ref:

F.Y.Siu et al. (2013). Structure of the human glucagon class B G-protein-coupled receptor. Nature, 499, 444-449. PubMed id: 23863937 DOI: 10.1038/nature12393

Date:

12-Jun-13 Release date: 24-Jul-13

Protein chain

P0ABE7  (C562_ECOLX) -  Soluble cytochrome b562 from Escherichia coli

Seq: 128 a.a.

Struc: 398 a.a.*

Protein chain

P47871  (GLR_HUMAN) -  Glucagon receptor from Homo sapiens

Seq: 477 a.a.

Struc: 398 a.a.*

* PDB and UniProt seqs differ at 104 residue positions (black crosses)

DOI no: 10.1038/nature12393

Nature 499:444-449 (2013)

PubMed id: 23863937

Structure of the human glucagon class B G-protein-coupled receptor.

F.Y.Siu, M.He, C.de Graaf, G.W.Han, D.Yang, Z.Zhang, C.Zhou, Q.Xu, D.Wacker, J.S.Joseph, W.Liu, J.Lau, V.Cherezov, V.Katritch, M.W.Wang, R.C.Stevens.

ABSTRACT

Binding of the glucagon peptide to the glucagon receptor (GCGR) triggers the release of glucose from the liver during fasting; thus GCGR plays an important role in glucose homeostasis. Here we report the crystal structure of the seven transmembrane helical domain of human GCGR at 3.4 Å resolution, complemented by extensive site-specific mutagenesis, and a hybrid model of glucagon bound to GCGR to understand the molecular recognition of the receptor for its native ligand. Beyond the shared seven transmembrane fold, the GCGR transmembrane domain deviates from class A G-protein-coupled receptors with a large ligand-binding pocket and the first transmembrane helix having a 'stalk' region that extends three alpha-helical turns above the plane of the membrane. The stalk positions the extracellular domain (~12 kilodaltons) relative to the membrane to form the glucagon-binding site that captures the peptide and facilitates the insertion of glucagon's amino terminus into the seven transmembrane domain.