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PDBsum entry 4gc3

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protein ligands metals links
Hydrolase PDB id
4gc3

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
263 a.a.
Ligands
SO4 ×3
Metals
_ZN ×3
Waters ×422
PDB id:
4gc3
Name: Hydrolase
Title: Crystal structure of l-histidinol phosphate phosphatase (hisk) from lactococcus lactis subsp. Lactis il1403 complexed with zn and sulfate
Structure: L-histidinol phosphate phosphatase. Chain: a. Fragment: unp residues 2-269. Synonym: histidinol-phosphatase, holpase. Engineered: yes
Source: Lactococcus lactis subsp. Lactis. Organism_taxid: 272623. Strain: il1403. Gene: hisk, ll1216, l37351. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.32Å     R-factor:   0.152     R-free:   0.162
Authors: A.A.Fedorov,E.V.Fedorov,S.Ghodge,F.M.Raushel,S.C.Almo
Key ref: S.V.Ghodge et al. (2013). Structural and mechanistic characterization of L-histidinol phosphate phosphatase from the polymerase and histidinol phosphatase family of proteins. Biochemistry, 52, 1101-1112. PubMed id: 23327428
Date:
29-Jul-12     Release date:   27-Feb-13    
PROCHECK
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 Headers
 References

Protein chain
Q02150  (HIS9_LACLA) -  Histidinol-phosphatase from Lactococcus lactis subsp. lactis (strain IL1403)
Seq:
Struc:
269 a.a.
263 a.a.*
Key:    Secondary structure  CATH domain
* PDB and UniProt seqs differ at 4 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.3.1.3.15  - histidinol-phosphatase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Histidine Biosynthesis (late stages)
      Reaction: L-histidinol phosphate + H2O = L-histidinol + phosphate
L-histidinol phosphate
+ H2O
= L-histidinol
+ phosphate
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
Biochemistry 52:1101-1112 (2013)
PubMed id: 23327428  
 
 
Structural and mechanistic characterization of L-histidinol phosphate phosphatase from the polymerase and histidinol phosphatase family of proteins.
S.V.Ghodge, A.A.Fedorov, E.V.Fedorov, B.Hillerich, R.Seidel, S.C.Almo, F.M.Raushel.
 
  ABSTRACT  
 
l-Histidinol phosphate phosphatase (HPP) catalyzes the hydrolysis of l-histidinol phosphate to l-histidinol and inorganic phosphate, the penultimate step in the biosynthesis of l-histidine. HPP from the polymerase and histidinol phosphatase (PHP) family of proteins possesses a trinuclear active site and a distorted (β/α)(7)-barrel protein fold. This group of enzymes is closely related to the amidohydrolase superfamily of enzymes. The mechanism of phosphomonoester bond hydrolysis by the PHP family of HPP enzymes was addressed. Recombinant HPP from Lactococcus lactis subsp. lactis that was expressed in Escherichia coli contained a mixture of iron and zinc in the active site and had a catalytic efficiency of ∼10(3) M(-1) s(-1). Expression of the protein under iron-free conditions resulted in the production of an enzyme with a 2 order of magnitude improvement in catalytic efficiency and a mixture of zinc and manganese in the active site. Solvent isotope and viscosity effects demonstrated that proton transfer steps and product dissociation steps are not rate-limiting. X-ray structures of HPP were determined with sulfate, l-histidinol phosphate, and a complex of l-histidinol and arsenate bound in the active site. These crystal structures and the catalytic properties of variants were used to identify the structural elements required for catalysis and substrate recognition by the HPP family of enzymes within the amidohydrolase superfamily.
 

 

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