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PDBsum entry 3v8m

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protein ligands links
Transferase PDB id
3v8m

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
257 a.a.
Ligands
Z8B ×2
CIT
Waters ×76
PDB id:
3v8m
Name: Transferase
Title: Crystal structure of NAD kinase 1 from listeria monocytogenes in complexe with 5'-azido-8-bromo-5'-deoxyadenosine
Structure: Probable inorganic polyphosphate/atp-NAD kinase 1. Chain: a. Synonym: poly(p)/atp NAD kinase 1. Engineered: yes
Source: Listeria monocytogenes. Organism_taxid: 1639. Gene: ppnk1, lmo0968. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
2.48Å     R-factor:   0.205     R-free:   0.237
Authors: M.Gelin,G.Poncet-Montange,L.Assairi,L.Morellato,V.Huteau,L.Dugu, O.Dussurget,S.Pochet,G.Labesse
Key ref: M.Gelin et al. (2012). Screening and in situ synthesis using crystals of a NAD kinase lead to a potent antistaphylococcal compound. Structure, 20, 1107-1117. PubMed id: 22608967
Date:
23-Dec-11     Release date:   14-Mar-12    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q8Y8D7  (NADK1_LISMO) -  NAD kinase 1 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Seq:
Struc:
264 a.a.
257 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.1.23  - NAD(+) kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: NAD+ + ATP = ADP + NADP+ + H+
NAD(+)
+ ATP
=
ADP
Bound ligand (Het Group name = Z8B)
matches with 58.06% similarity
+ NADP(+)
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
Structure 20:1107-1117 (2012)
PubMed id: 22608967  
 
 
Screening and in situ synthesis using crystals of a NAD kinase lead to a potent antistaphylococcal compound.
M.Gelin, G.Poncet-Montange, L.Assairi, L.Morellato, V.Huteau, L.Dugué, O.Dussurget, S.Pochet, G.Labesse.
 
  ABSTRACT  
 
No abstract given.

 

 

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