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PDBsum entry 3v2a

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protein Protein-protein interface(s) links
Hormone/signaling protein PDB id
3v2a

 

 

 

 

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Contents
Protein chains
185 a.a.
95 a.a.
PDB id:
3v2a
Name: Hormone/signaling protein
Title: Vegfr-2/vegf-a complex structure
Structure: Vascular endothelial growth factor receptor 2. Chain: r. Fragment: unp residues 1-764. Synonym: vegfr-2, fetal liver kinase 1, flk-1, kinase insert domain receptor, kdr, protein-tyrosine kinase receptor flk-1. Engineered: yes. Vascular endothelial growth factor a. Chain: a. Fragment: unp residues 27-140.
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: flk1, kdr, vegfr2. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Gene: vegf, vegf-a, vegfa. Expressed in: pichia pastoris. Expression_system_taxid: 4922
Resolution:
3.20Å     R-factor:   0.247     R-free:   0.301
Authors: M.S.Brozzo,V.-M.Leppanen,F.K.Winkler,K.Ballmer-Hofer
Key ref: M.S.Brozzo et al. (2012). Thermodynamic and structural description of allosterically regulated VEGFR-2 dimerization. Blood, 119, 1781-1788. PubMed id: 22207738
Date:
12-Dec-11     Release date:   18-Jan-12    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P35968  (VGFR2_HUMAN) -  Vascular endothelial growth factor receptor 2 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1356 a.a.
185 a.a.
Protein chain
Pfam   ArchSchema ?
P15692  (VEGFA_HUMAN) -  Vascular endothelial growth factor A, long form from Homo sapiens
Seq:
Struc:
395 a.a.
95 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: Chain R: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
Blood 119:1781-1788 (2012)
PubMed id: 22207738  
 
 
Thermodynamic and structural description of allosterically regulated VEGFR-2 dimerization.
M.S.Brozzo, S.Bjelić, K.Kisko, T.Schleier, V.M.Leppänen, K.Alitalo, F.K.Winkler, K.Ballmer-Hofer.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
23076159 K.Verstraete, and S.N.Savvides (2012).
Extracellular assembly and activation principles of oncogenic class III receptor tyrosine kinases.
  Nat Rev Cancer, 12, 753-766.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

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