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PDBsum entry 3o2p

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protein ligands Protein-protein interface(s) links
Ligase, cell cycle PDB id
3o2p

 

 

 

 

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Contents
Protein chains
199 a.a. *
86 a.a. *
Ligands
GOL ×3
Waters ×137
* Residue conservation analysis
PDB id:
3o2p
Name: Ligase, cell cycle
Title: A dual e3 mechanism for rub1 ligation to cdc53: dcn1(p)-cdc53(whb)
Structure: Defective in cullin neddylation protein 1. Chain: a. Fragment: dcun1 domain, residues 70-269. Engineered: yes. Cell division control protein 53. Chain: e. Fragment: residues 730-815. Synonym: cullin-a, e3 ubiquitin ligase complex scf subunit cdc53. Engineered: yes
Source: Saccharomyces cerevisiae. Yeast. Organism_taxid: 4932. Gene: dcn1, ylr128w, l3111. Expressed in: escherichia coli. Expression_system_taxid: 562. Gene: cdc53, ydl132w, d2190. Expression_system_taxid: 562
Resolution:
2.23Å     R-factor:   0.175     R-free:   0.226
Authors: D.C.Scott,J.K.Monda,C.R.R.Grace,D.M.Duda,R.W.Kriwacki,T.Kurz, B.A.Schulman
Key ref: D.C.Scott et al. (2010). A dual E3 mechanism for Rub1 ligation to Cdc53. Mol Cell, 39, 784-796. PubMed id: 20832729
Date:
22-Jul-10     Release date:   15-Sep-10    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q12395  (DCN1_YEAST) -  Defective in cullin neddylation protein 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Seq:
Struc:
269 a.a.
199 a.a.
Protein chain
Pfam   ArchSchema ?
Q12018  (CDC53_YEAST) -  Cell division control protein 53 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Seq:
Struc:
 
Seq:
Struc:
815 a.a.
86 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
Mol Cell 39:784-796 (2010)
PubMed id: 20832729  
 
 
A dual E3 mechanism for Rub1 ligation to Cdc53.
D.C.Scott, J.K.Monda, C.R.Grace, D.M.Duda, R.W.Kriwacki, T.Kurz, B.A.Schulman.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21765416 M.F.Calabrese, D.C.Scott, D.M.Duda, C.R.Grace, I.Kurinov, R.W.Kriwacki, and B.A.Schulman (2011).
A RING E3-substrate complex poised for ubiquitin-like protein transfer: structural insights into cullin-RING ligases.
  Nat Struct Mol Biol, 18, 947-949.
PDB code: 3rtr
21811311 S.Rahighi, and I.Dikic (2011).
Conformational flexibility and rotation of the RING domain in activation of cullin-RING ligases.
  Nat Struct Mol Biol, 18, 863-865.  
21076411 C.S.Hwang, A.Shemorry, D.Auerbach, and A.Varshavsky (2010).
The N-end rule pathway is mediated by a complex of the RING-type Ubr1 and HECT-type Ufd4 ubiquitin ligases.
  Nat Cell Biol, 12, 1177-1185.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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