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PDBsum entry 3keh

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protein ligands Protein-protein interface(s) links
Hydrolase PDB id
3keh

 

 

 

 

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Contents
Protein chain
497 a.a. *
Ligands
NAG-NAG
NDG
SO4 ×8
GOL ×2
NAG ×2
Waters ×42
* Residue conservation analysis
PDB id:
3keh
Name: Hydrolase
Title: Crystal structure of n370s glucocerebrosidase mutant at ph 7.4
Structure: Glucocerebrosidase. Chain: a, b. Synonym: beta-glucocerebrosidase, acid beta-glucosidase, d-glucosyl- n-acylsphingosine glucohydrolase, alglucerase, imiglucerase. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: gba, gc, gluc. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108
Resolution:
2.80Å     R-factor:   0.215     R-free:   0.273
Authors: R.R.Wei,S.Boucher,C.Q.Pan,T.Edmunds
Key ref: R.R.Wei et al. Crystal structure of glucocerebrosidase containing th mutation: implication on chaperon therapy. To be published, .
Date:
26-Oct-09     Release date:   27-Oct-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
P04062  (GLCM_HUMAN) -  Lysosomal acid glucosylceramidase from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
536 a.a.
497 a.a.*
Key:    Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class 2: E.C.2.4.1.-  - ?????
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
   Enzyme class 3: E.C.3.2.1.-  - ?????
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
   Enzyme class 4: E.C.3.2.1.45  - glucosylceramidase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: a beta-D-glucosyl-(1<->1')-N-acylsphing-4-enine + H2O = an N-acylsphing- 4-enine + D-glucose
beta-D-glucosyl-(1<->1')-N-acylsphing-4-enine
+ H2O
= N-acylsphing- 4-enine
+
D-glucose
Bound ligand (Het Group name = NAG)
matches with 62.50% similarity
   Enzyme class 5: E.C.3.2.1.46  - galactosylceramidase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: a beta-D-galactosyl-(1<->1')-N-acylsphing-4-enine + H2O = an N-acylsphing-4-enine + D-galactose
beta-D-galactosyl-(1<->1')-N-acylsphing-4-enine
+ H2O
= N-acylsphing-4-enine
+
D-galactose
Bound ligand (Het Group name = NAG)
matches with 62.50% similarity
Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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