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PDBsum entry 3js8

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protein ligands links
Oxidoreductase PDB id
3js8

 

 

 

 

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Contents
Protein chain
538 a.a. *
Ligands
GLC-FRU
FAD
Waters ×413
* Residue conservation analysis
PDB id:
3js8
Name: Oxidoreductase
Title: Solvent-stable cholesterol oxidase
Structure: Cholesterol oxidase. Chain: a. Engineered: yes
Source: Chromobacterium sp. Ds-1. Organism_taxid: 507619. Gene: cho. Expressed in: escherichia coli. Expression_system_taxid: 562.
Resolution:
1.54Å     R-factor:   0.176     R-free:   0.196
Authors: M.Sagermann,A.Ohtaki,K.Newton,N.Doukyu
Key ref: M.Sagermann et al. (2010). Structural characterization of the organic solvent-stable cholesterol oxidase from Chromobacterium sp. DS-1. J Struct Biol, 170, 32-40. PubMed id: 20102741
Date:
09-Sep-09     Release date:   09-Feb-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
B5MGF8  (B5MGF8_9NEIS) -  Cholesterol oxidase from Chromobacterium sp. DS-1
Seq:
Struc:
 
Seq:
Struc:
584 a.a.
538 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.1.1.3.6  - cholesterol oxidase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: cholesterol + O2 = cholest-5-en-3-one + H2O2
cholesterol
+ O2
= cholest-5-en-3-one
+ H2O2
      Cofactor: FAD
FAD
Bound ligand (Het Group name = FAD) corresponds exactly
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
J Struct Biol 170:32-40 (2010)
PubMed id: 20102741  
 
 
Structural characterization of the organic solvent-stable cholesterol oxidase from Chromobacterium sp. DS-1.
M.Sagermann, A.Ohtaki, K.Newton, N.Doukyu.
 
  ABSTRACT  
 
Cholesterol oxidase is of significant commercial interest as it is widely used as a biosensor for the detection of cholesterol in clinical samples, blood serum and food. Increased stability of this enzyme with regards to temperature and different solvent conditions are of great importance to the reliability and versatility of its applications. We here report the crystal structure of the cholesterol oxidase of Chromobacterium sp. DS-1 (CHOLOX). In contrast to other previously characterized cholesterol oxidases, this enzyme retains high activity in organic solvents and detergents at temperatures above 85 degrees C despite its mesophilic origin. With the availability of one other homologous oxidase of known three-dimensional structure, a detailed comparison of its sequence and structure was performed to elucidate the mechanisms of stabilization. In contrast to factors that typically contribute to the stability of thermophilic proteins, the structure of CHOLOX exhibits a larger overall cavity volume, less charged residues and less salt bridge interactions. Moreover, the vast majority of residue substitutions were found on or near the protein's solvent exposed surface. We propose that the engineering of enhanced stability may also be accomplished through selective engineering of the protein periphery rather than by redesigning its entire core.
 

 

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