PDBsum entry 3dld

Hydrolase

PDB id

3dld

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Contents

			Protein chain

					170 a.a. *

			Metals

					_CD ×3

			Waters ×115

* Residue conservation analysis

Obsolete entry

PDB id:

3dld

Links
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Name:

Hydrolase

Title:

Crystal structure of peptide deformylase, xoo1075, from xanthomonas oryzae pv. Oryzae kacc10331

Structure:

Peptide deformylase. Chain: a. Fragment: residues in database 42-212. Synonym: polypeptide deformylase. Engineered: yes

Source:

Xanthomonas oryzae pv. Oryzae. Organism_taxid: 64187. Strain: kacc10331. Gene: def, xoo1075. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.

Resolution:

2.60Å

R-factor:

0.195

R-free:

0.240

Authors:

H.P.-T.Ngo,J.K.Kim,J.H.Jung,L.W.Kang

Key ref:

H.P.-T.Ngo et al. Crystal structure of peptide deformylase, Xoo1075, From xanthomonas oryzae pv. Oryzae kacc10331. To be published, .

Date:

27-Jun-08

Release date:

30-Jun-09

PROCHECK

	Headers

	References

Protein chain

Q5H3Z2 (Q5H3Z2_XANOR) - Peptide deformylase from Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)

Seq: Struc:					212 a.a. 170 a.a.

Key:

PfamA domain

Secondary structure

CATH domain



		Enzyme reactions

Enzyme class:

E.C.3.5.1.88 - peptide deformylase.

[IntEnz] [ExPASy] [KEGG] [BRENDA]

Reaction:

N-terminal N-formyl-L-methionyl-[peptide] + H2O = N-terminal L-methionyl- [peptide] + formate

N-terminal N-formyl-L-methionyl-[peptide]	+	H2O	=	N-terminal L-methionyl- [peptide]	+	formate

Cofactor:

Fe(2+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site