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PDBsum entry 3cth

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Transferase PDB id
3cth

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
295 a.a. *
Ligands
319
Waters ×91
* Residue conservation analysis
PDB id:
3cth
Name: Transferase
Title: Crystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor c-met in complex with a aminopyridine based inhibitor
Structure: Hepatocyte growth factor receptor. Chain: a. Fragment: tyrosine kinase, unp residues 1049-1360. Synonym: hgf receptor, scatter factor receptor, sf receptor, hgf/sf receptor, met proto-oncogene tyrosine kinase, c-met. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Gene: met. Expressed in: spodoptera frugiperda. Expression_system_cell_line: sf9.
Resolution:
2.30Å     R-factor:   0.212     R-free:   0.273
Authors: J.Sack
Key ref: Z.W.Cai et al. (2008). Discovery of orally active pyrrolopyridine- and aminopyridine-based Met kinase inhibitors. Bioorg Med Chem Lett, 18, 3224-3229. PubMed id: 18479916
Date:
14-Apr-08     Release date:   10-Jun-08    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P08581  (MET_HUMAN) -  Hepatocyte growth factor receptor from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1390 a.a.
295 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
Bioorg Med Chem Lett 18:3224-3229 (2008)
PubMed id: 18479916  
 
 
Discovery of orally active pyrrolopyridine- and aminopyridine-based Met kinase inhibitors.
Z.W.Cai, D.Wei, G.M.Schroeder, L.A.Cornelius, K.Kim, X.T.Chen, R.J.Schmidt, D.K.Williams, J.S.Tokarski, Y.An, J.S.Sack, V.Manne, A.Kamath, Y.Zhang, P.Marathe, J.T.Hunt, L.J.Lombardo, J.Fargnoli, R.M.Borzilleri.
 
  ABSTRACT  
 
A series of acylurea analogs derived from pyrrolopyridine and aminopyridine scaffolds were identified as potent inhibitors of Met kinase activity. The SAR at various positions of the two kinase scaffolds was investigated. These studies led to the discovery of compounds 3b and 20b, which demonstrated favorable pharmacokinetic properties in mice and significant antitumor activity in a human gastric carcinoma xenograft model.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21487786 J.Caballero, M.Quiliano, J.H.Alzate-Morales, M.Zimic, and E.Deharo (2011).
Docking and quantitative structure-activity relationship studies for 3-fluoro-4-(pyrrolo[2,1-f][1,2,4]triazin-4-yloxy)aniline, 3-fluoro-4-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)aniline, and 4-(4-amino-2-fluorophenoxy)-2-pyridinylamine derivatives as c-Met kinase inhibitors.
  J Comput Aided Mol Des, 25, 349-369.  
21561768 Z.Liang, D.Zhang, J.Ai, L.Chen, H.Wang, X.Kong, M.Zheng, H.Liu, C.Luo, M.Geng, H.Jiang, and K.Chen (2011).
Identification and synthesis of N'-(2-oxoindolin-3-ylidene)hydrazide derivatives against c-Met kinase.
  Bioorg Med Chem Lett, 21, 3749-3754.  
19220318 A.G.Villaseñor, R.Kondru, H.Ho, S.Wang, E.Papp, D.Shaw, J.W.Barnett, M.F.Browner, and A.Kuglstatter (2009).
Structural insights for design of potent spleen tyrosine kinase inhibitors from crystallographic analysis of three inhibitor complexes.
  Chem Biol Drug Des, 73, 466-470.
PDB codes: 3fqe 3fqh 3fqs
19590778 C.L.Gibson, J.K.Huggan, A.Kennedy, L.Kiefer, J.H.Lee, C.J.Suckling, C.Clements, A.L.Harvey, W.N.Hunter, and L.B.Tulloch (2009).
Diversity oriented syntheses of fused pyrimidines designed as potential antifolates.
  Org Biomol Chem, 7, 1829-1842.  
18973168 H.Schirok, R.Kast, S.Figueroa-Pérez, S.Bennabi, M.J.Gnoth, A.Feurer, H.Heckroth, M.Thutewohl, H.Paulsen, A.Knorr, J.Hütter, M.Lobell, K.Münter, V.Geiss, H.Ehmke, D.Lang, M.Radtke, J.Mittendorf, and J.P.Stasch (2008).
Design and synthesis of potent and selective azaindole-based Rho kinase (ROCK) inhibitors.
  ChemMedChem, 3, 1893-1904.  
19053777 I.Kufareva, and R.Abagyan (2008).
Type-II kinase inhibitor docking, screening, and profiling using modified structures of active kinase states.
  J Med Chem, 51, 7921-7932.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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