spacer
spacer

PDBsum entry 3bsd
Go to PDB code: 
protein ligands metals links
Photosynthesis PDB id
3bsd

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chain
359 a.a. *
Ligands
BCL ×8
Metals
_MG
Waters ×178
* Residue conservation analysis
PDB id:
3bsd
Name: Photosynthesis
Title: Light harvesting protein from rc of chlorobium tepidum
Structure: Bacteriochlorophyll a protein. Chain: a. Synonym: bchl a protein, bcp, fenna-matthews-olson protein, fmo protein, light harvesting protein
Source: Chlorobaculum tepidum. Organism_taxid: 1097
Resolution:
2.30Å     R-factor:   0.178     R-free:   0.273
Authors: N.Nelson,F.Frolow,A.Brn-Shem
Key ref: A.Ben-Shem et al. (2004). Evolution of photosystem I - from symmetry through pseudo-symmetry to asymmetry. Febs Lett, 564, 274-280. PubMed id: 15111109
Date:
23-Dec-07     Release date:   22-Jan-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q46393  (BCPA_CHLTE) -  Bacteriochlorophyll a protein from Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Seq:
Struc: 		366 a.a.
359 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
Febs Lett 564:274-280 (2004)
PubMed id: 15111109  
 
 
Evolution of photosystem I - from symmetry through pseudo-symmetry to asymmetry.
A.Ben-Shem, F.Frolow, N.Nelson.
 
  ABSTRACT  
 
The evolution of photosystem (PS) I was probably initiated by the formation of a homodimeric reaction center similar to the one currently present in green bacteria. Gene duplication has generated a heterodimeric reaction center that subsequently evolved to the PSI present in cyanobacteria, algae and plant chloroplasts. During the evolution of PSI several attempts to maximize the efficiency of light harvesting took place in the various organisms. In the Chlorobiaceae, chlorosomes and FMO were added to the homodimeric reaction center. In cyanobacteria phycobilisomes and CP43' evolved to cope with the light limitations and stress conditions. The plant PSI utilizes a modular arrangement of membrane light-harvesting proteins (LHCI). We obtained structural information from the two ends of the evolutionary spectrum. Novel features in the structure of Chlorobium tepidum FMO are reported in this communication. Our structure of plant PSI reveals that the addition of subunit G provided the template for LHCI binding, and the addition of subunit H prevented the possibility of trimer formation and provided a binding site for LHCII and the onset of energy spillover from PSII to PSI.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21181557 C.R.Larson, C.O.Seng, L.Lauman, H.J.Matthies, J.Wen, R.E.Blankenship, and J.P.Allen (2011).
The three-dimensional structure of the FMO protein from Pelodictyon phaeum and the implications for energy transfer.
  Photosynth Res, 107, 139-150.
PDB code: 3oeg
21118826 M.Watanabe, H.Kubota, H.Wada, R.Narikawa, and M.Ikeuchi (2011).
Novel supercomplex organization of photosystem I in Anabaena and Cyanophora paradoxa.
  Plant Cell Physiol, 52, 162-168.  
19923216 A.Amunts, H.Toporik, A.Borovikova, and N.Nelson (2010).
Structure determination and improved model of plant photosystem I.
  J Biol Chem, 285, 3478-3486.
PDB codes: 2wsc 2wse 2wsf 3lw5
20229036 M.T.Milder, B.Brüggemann, R.van Grondelle, and J.L.Herek (2010).
Revisiting the optical properties of the FMO protein.
  Photosynth Res, 104, 257-274.  
20077007 M.Ã.˜.Pedersen, J.Linnanto, N.U.Frigaard, N.C.Nielsen, and M.Miller (2010).
A model of the protein-pigment baseplate complex in chlorosomes of photosynthetic green bacteria.
  Photosynth Res, 104, 233-243.  
20094789 Y.Tsukatani, J.Wen, R.E.Blankenship, and D.A.Bryant (2010).
Characterization of the FMO protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum.
  Photosynth Res, 104, 201-209.  
19446520 A.Amunts, and N.Nelson (2009).
Plant photosystem I design in the light of evolution.
  Structure, 17, 637-650.  
19437128 D.E.Tronrud, J.Wen, L.Gay, and R.E.Blankenship (2009).
The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria.
  Photosynth Res, 100, 79-87.
PDB codes: 3eni 3eoj
19339500 J.Wen, H.Zhang, M.L.Gross, and R.E.Blankenship (2009).
Membrane orientation of the FMO antenna protein from Chlorobaculum tepidum as determined by mass spectrometry-based footprinting.
  Proc Natl Acad Sci U S A, 106, 6134-6139.  
19125349 L.O.Björn, G.C.Papageorgiou, R.E.Blankenship, and Govindjee (2009).
A viewpoint: Why chlorophyll a?
  Photosynth Res, 99, 85-98.  
18854313 L.Peng, H.Shimizu, and T.Shikanai (2008).
The Chloroplast NAD(P)H Dehydrogenase Complex Interacts with Photosystem I in Arabidopsis.
  J Biol Chem, 283, 34873-34879.  
18983262 S.Eberhard, G.Finazzi, and F.A.Wollman (2008).
The dynamics of photosynthesis.
  Annu Rev Genet, 42, 463-515.  
17476261 A.Amunts, O.Drory, and N.Nelson (2007).
The structure of a plant photosystem I supercomplex at 3.4 A resolution.
  Nature, 447, 58-63.
PDB code: 2o01
17390231 C.D.van der Weij-de Wit, J.A.Ihalainen, R.van Grondelle, and J.P.Dekker (2007).
Excitation energy transfer in native and unstacked thylakoid membranes studied by low temperature and ultrafast fluorescence spectroscopy.
  Photosynth Res, 93, 173-182.  
17411433 J.B.Pereira-Leal, E.D.Levy, C.Kamp, and S.A.Teichmann (2007).
Evolution of protein complexes by duplication of homomeric interactions.
  Genome Biol, 8, R51.  
16915355 M.Ã.˜.Pedersen, J.Borch, P.Højrup, R.P.Cox, and M.Miller (2006).
The light-harvesting antenna of Chlorobium tepidum: interactions between the FMO protein and the major chlorosome protein CsmA studied by surface plasmon resonance.
  Photosynth Res, 89, 63-69.  
16669773 N.Nelson, and C.F.Yocum (2006).
Structure and function of photosystems I and II.
  Annu Rev Plant Biol, 57, 521-565.  
17009862 W.K.Kim, A.Henschel, C.Winter, and M.Schroeder (2006).
The many faces of protein-protein interactions: A compendium of interface geometry.
  PLoS Comput Biol, 2, e124.  
16307115 A.Amunts, A.Ben-Shem, and N.Nelson (2005).
Solving the structure of plant photosystem I--biochemistry is vital.
  Photochem Photobiol Sci, 4, 1011-1015.  
15955818 C.Jolley, A.Ben-Shem, N.Nelson, and P.Fromme (2005).
Structure of plant photosystem I revealed by theoretical modeling.
  J Biol Chem, 280, 33627-33636.
PDB code: 1yo9
16108066 N.Nelson, and A.Ben-Shem (2005).
The structure of photosystem I and evolution of photosynthesis.
  Bioessays, 27, 914-922.  
15954800 P.Kiley, X.Zhao, M.Vaughn, M.A.Baldo, B.D.Bruce, and S.Zhang (2005).
Self-assembling peptide detergents stabilize isolated photosystem I on a dry surface for an extended time.
  PLoS Biol, 3, e230.  
16307127 R.Kouril, N.van Oosterwijk, A.E.Yakushevska, and E.J.Boekema (2005).
Photosystem I: a search for green plant trimers.
  Photochem Photobiol Sci, 4, 1091-1094.  
15983042 T.Morosinotto, M.Ballottari, F.Klimmek, S.Jansson, and R.Bassi (2005).
The association of the antenna system to photosystem I in higher plants. Cooperative interactions stabilize the supramolecular complex and enhance red-shifted spectral forms.
  J Biol Chem, 280, 31050-31058.  
15573135 N.Nelson, and A.Ben-Shem (2004).
The complex architecture of oxygenic photosynthesis.
  Nat Rev Mol Cell Biol, 5, 971-982.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

spacer
spacer