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PDBsum entry 3bd7
Go to PDB code:
Transferase
PDB id
3bd7
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Contents
Protein chain
810 a.a.
*
Ligands
PLP
CKB
×2
Waters
×361
*
Residue conservation analysis
PDB id:
3bd7
Links
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CATH
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PDBSWS
PDBePISA
CSA
ProSAT
Name:
Transferase
Title:
Glycogen phosphorylase complex with 1(-d-glucopyranosyl) thymine
Structure:
Glycogen phosphorylase, muscle form. Chain: a. Synonym: myophosphorylase. Ec: 2.4.1.1
Source:
Oryctolagus cuniculus. Rabbit. Organism_taxid: 9986. Other_details: muscle
Resolution:
1.90Å
R-factor:
0.185
R-free:
0.205
Authors:
D.A.Sovantzis,T.Hadjiloi,J.M.Hayes,S.E.Zographos,E.D.Chrysina, N.G.Oikonomakos
Key ref:
C.Cisma et al. D-Glucopyranosyl pyrimidine nucleoside binding to muscle glycogen phosphorylase b.
To be published
, .
Date:
14-Nov-07
Release date:
18-Nov-08
PROCHECK
Headers
References
Protein chain
?
P00489
(PYGM_RABIT) - Glycogen phosphorylase, muscle form from Oryctolagus cuniculus
Seq:
Struc:
Seq:
Struc:
843 a.a.
810 a.a.
Key:
PfamA domain
Secondary structure
CATH domain
Enzyme reactions
Enzyme class:
E.C.2.4.1.1
- glycogen phosphorylase.
[IntEnz]
[ExPASy]
[KEGG]
[BRENDA]
Pathway:
Glycogen
Reaction:
[(1->4)-alpha-D-glucosyl](n) + phosphate = [(1->4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate
[(1->4)-alpha-D-glucosyl](n)
+
phosphate
=
[(1->4)-alpha-D-glucosyl](n-1)
+
alpha-D-glucose 1-phosphate
Bound ligand (Het Group name =
PLP
)
matches with 63.16% similarity
Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
Links
