PDBsum entry 3v2d

Ribosome

PDB id: 3v2d

Contents

Protein chains

275 a.a.

204 a.a.

203 a.a.

181 a.a.

174 a.a.

146 a.a.

140 a.a.

122 a.a.

149 a.a.

141 a.a.

118 a.a.

110 a.a.

131 a.a.

116 a.a.

101 a.a.

112 a.a.

95 a.a.

107 a.a.

198 a.a.

76 a.a.

97 a.a.

70 a.a.

59 a.a.

46 a.a.

59 a.a.

53 a.a.

48 a.a.

64 a.a.

36 a.a.

DNA/RNA

Metals

_MG ×809

_ZN ×5

Waters ×2198

Obsolete entry

PDB id:

3v2d

Name:

Ribosome

Title:

Crystal structure of yfia bound to the 70s ribosome. This PDB entry contains coordinates for the 50s subunit of the 1st ribosome in the asu

Structure:

23s ribosomal RNA. Chain: a. 5s ribosomal RNA. Chain: b. 50s ribosomal protein l2. Chain: d. 50s ribosomal protein l3. Chain: e. 50s ribosomal protein l4.

Source:

Thermus thermophilus. Organism_taxid: 274. Strain: hb8. Strain: hb8

Resolution:

2.70Å R-factor: 0.219 R-free: 0.254

Authors:

Y.S.Polikanov,G.M.Blaha,T.A.Steitz

Key ref:

Y.S.Polikanov et al. (2012). How hibernation factors RMF, HPF, and YfiA turn off protein synthesis. Science, 336, 915-918. PubMed id: 22605777

Date:

12-Dec-11 Release date: 23-May-12

Protein chain

P60405  (RL2_THET8) -  50S ribosomal protein L2 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 276 a.a.

Struc: 275 a.a.

Protein chain

Q5SHN8  (RL3_THET8) -  50S ribosomal protein L3 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 206 a.a.

Struc: 204 a.a.

Protein chain

Q5SHN9  (RL4_THET8) -  50S ribosomal protein L4 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 210 a.a.

Struc: 203 a.a.

Protein chain

Q5SHQ0  (RL5_THET8) -  50S ribosomal protein L5 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 182 a.a.

Struc: 181 a.a.

Protein chain

Q5SHQ3  (RL6_THET8) -

Protein chain

Q5SLQ1  (RL9_THET8) -  50S ribosomal protein L9 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 148 a.a.

Struc: 146 a.a.

Protein chain

P60488  (RL13_THET8) -  50S ribosomal protein L13 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 140 a.a.

Struc: 140 a.a.

Protein chain

Q5SHP8  (RL14_THET8) -  50S ribosomal protein L14 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 122 a.a.

Struc: 122 a.a.

Protein chain

Q5SHQ7  (RL15_THET8) -  50S ribosomal protein L15 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 150 a.a.

Struc: 149 a.a.

Protein chain

P60489  (RL16_THET8) -  50S ribosomal protein L16 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 141 a.a.

Struc: 141 a.a.

Protein chain

Q9Z9H5  (RL17_THET8) -  50S ribosomal protein L17 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 118 a.a.

Struc: 118 a.a.

Protein chain

Q5SHQ4  (RL18_THET8) -  50S ribosomal protein L18 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 112 a.a.

Struc: 110 a.a.

Protein chain

P60490  (RL19_THET8) -  50S ribosomal protein L19 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 146 a.a.

Struc: 131 a.a.

Protein chain

P60491  (RL20_THET8) -  50S ribosomal protein L20 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 118 a.a.

Struc: 116 a.a.

Protein chain

P60492  (RL21_THET8) -  50S ribosomal protein L21 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 101 a.a.

Struc: 101 a.a.

Protein chain

Q5SHP3  (RL22_THET8) -  50S ribosomal protein L22 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 113 a.a.

Struc: 112 a.a.

Protein chain

Q5SHP0  (RL23_THET8) -  50S ribosomal protein L23 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 96 a.a.

Struc: 95 a.a.

Protein chain

Q5SHP9  (RL24_THET8) -  50S ribosomal protein L24 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 110 a.a.

Struc: 107 a.a.

Protein chain

Q5SHZ1  (RL25_THET8) -  50S ribosomal protein L25 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 206 a.a.

Struc: 198 a.a.

Protein chain

P60493  (RL27_THET8) -  50S ribosomal protein L27 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 85 a.a.

Struc: 76 a.a.

Protein chain

P60494  (RL28_THET8) -  50S ribosomal protein L28 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 98 a.a.

Struc: 97 a.a.

Protein chain

Q5SHP6  (RL29_THET8) -  50S ribosomal protein L29 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 72 a.a.

Struc: 70 a.a.

Protein chain

Q5SHQ6  (RL30_THET8) -  50S ribosomal protein L30 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 60 a.a.

Struc: 59 a.a.

Protein chain

Q5SJE1  (RL31_THET8) -  50S ribosomal protein L31 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 71 a.a.

Struc: 46 a.a.

Protein chain

P80339  (RL32_THET8) -  50S ribosomal protein L32 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 60 a.a.

Struc: 59 a.a.

Protein chain

P35871  (RL33_THET8) -  50S ribosomal protein L33 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 54 a.a.

Struc: 53 a.a.

Protein chain

P80340  (RL34_THET8) -  50S ribosomal protein L34 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 49 a.a.

Struc: 48 a.a.

Protein chain

Q5SKU1  (RL35_THET8) -  50S ribosomal protein L35 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 65 a.a.

Struc: 64 a.a.

Protein chain

Q5SHR2  (RL36_THET8) -  50S ribosomal protein L36 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

Seq: 37 a.a.

Struc: 36 a.a.

DNA/RNA chains

A-G-A-U-G-G-U-A-A-G-G-G-C-C-C-A-C-G-G-U-G-G-A-U-G-C-C-U-C-G-G-C-A-C-C-C-G-A-G- ... 2827 bases

U-C-C-C-C-C-G-U-G-C-C-C-A-U-A-G-C-G-G-C-G-U-G-G-A-A-C-C-A-C-C-C-G-U-U-C-C-C-A- 120 bases

Science 336:915-918 (2012)

PubMed id: 22605777

How hibernation factors RMF, HPF, and YfiA turn off protein synthesis.

Y.S.Polikanov, G.M.Blaha, T.A.Steitz.

ABSTRACT

No abstract given.