PDBsum entry 3sld

Viral protein

PDB id: 3sld

Contents

Protein chains

(+ 2 more) 309 a.a.

293 a.a.

Ligands

GAL-FUC-A2G ×8

Waters ×707

PDB id:

3sld

Name:

Viral protein

Title:

Structural characterization of a gii.4 2004 norovirus variant (tch05) bound to a trisaccharide

Structure:

Capsid. Chain: a, b, c, d, e, f, g, h, i, j. Fragment: protruding domain (unp residues 221-531). Engineered: yes

Source:

Norovirus hu/gii.4/2004/nl. Organism_taxid: 311380. Expressed in: escherichia coli. Expression_system_taxid: 562

Resolution:

2.68Å R-factor: 0.183 R-free: 0.230

Authors:

S.Shanker,J.-M.Choi,B.Sankaran,R.L.Atmar,M.K.Estes,B.V.V.Prasad

Key ref:

S.Shanker et al. (2011). Structural analysis of histo-blood group antigen binding specificity in a norovirus GII.4 epidemic variant: implications for epochal evolution. J Virol, 85, 8635-8645. PubMed id: 21715503

Date:

24-Jun-11 Release date: 13-Jul-11

Protein chains

Q5EGK8  (Q5EGK8_9CALI) -  Capsid from Norovirus Hu/GII.4/2004/NL

Seq: 540 a.a.

Struc: 309 a.a.*

Protein chains

Q5EGK8  (Q5EGK8_9CALI) -  Capsid from Norovirus Hu/GII.4/2004/NL

Seq: 540 a.a.

Struc: 293 a.a.*

* PDB and UniProt seqs differ at 6 residue positions (black crosses)

J Virol 85:8635-8645 (2011)

PubMed id: 21715503

Structural analysis of histo-blood group antigen binding specificity in a norovirus GII.4 epidemic variant: implications for epochal evolution.

S.Shanker, J.M.Choi, B.Sankaran, R.L.Atmar, M.K.Estes, B.V.Prasad.

ABSTRACT

No abstract given.