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PDBsum entry 3n2b
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Contents |
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* Residue conservation analysis
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PDB id:
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| Name: |
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Lyase
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Title:
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1.8 angstrom resolution crystal structure of diaminopimelate decarboxylase (lysa) from vibrio cholerae.
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Structure:
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Diaminopimelate decarboxylase. Chain: a, b, c, d. Synonym: dap decarboxylase. Engineered: yes
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Source:
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Vibrio cholerae. Organism_taxid: 243277. Strain: n16961. Gene: lysa, vc_0125. Expressed in: escherichia coli. Expression_system_taxid: 562.
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Resolution:
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1.80Å
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R-factor:
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0.184
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R-free:
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0.219
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Authors:
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G.Minasov,A.Halavaty,L.Shuvalova,I.Dubrovska,J.Winsor,L.Papazisi, W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)
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Key ref:
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G.Minasov
et al.
1.8 angstrom resolution crystal structure of diaminopimelate decarboxylase (lysa) from vibrio chol.
To be published,
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Date:
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17-May-10
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Release date:
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09-Jun-10
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PROCHECK
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Headers
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References
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Q9KVL7
(DCDA_VIBCH) -
Diaminopimelate decarboxylase from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
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Seq:
Struc:
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417 a.a.
411 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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Enzyme class:
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E.C.4.1.1.20
- diaminopimelate decarboxylase.
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Pathway:
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Lysine biosynthesis (later stages)
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Reaction:
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meso-2,6-diaminopimelate + H+ = L-lysine + CO2
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meso-2,6-diaminopimelate
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+
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H(+)
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=
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L-lysine
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+
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CO2
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Cofactor:
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Pyridoxal 5'-phosphate
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Pyridoxal 5'-phosphate
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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Links
