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PDBsum entry 3e3n

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protein ligands Protein-protein interface(s) links
Transferase PDB id
3e3n

 

 

 

 

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JSmol PyMol  
Contents
Protein chains
(+ 2 more) 814 a.a. *
Ligands
AMP ×8
SO4 ×16
Waters ×350
* Residue conservation analysis
PDB id:
3e3n
Name: Transferase
Title: The glycogen phosphorylase b r state- amp complex
Structure: Glycogen phosphorylase, muscle form. Chain: a, b, c, d, e, f, g, h. Synonym: myophosphorylase, glycogen phosphorylase b. Ec: 2.4.1.1
Source: Oryctolagus cuniculus. European rabbit,japanese white rabbit,domestic rabbit,rabbits. Organism_taxid: 9986. Tissue: muscle
Resolution:
2.70Å     R-factor:   0.195     R-free:   0.256
Authors: D.D.Leonidas,S.E.Zographos,N.G.Oikonomakos
Key ref: D.D.Leonidas et al. The crystal structure of the octameric muscle glycogen phosphorylase-Amp complex: insights into enzyme activation. To be published, . PubMed id: 34473107
Date:
07-Aug-08     Release date:   18-Aug-09    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P00489  (PYGM_RABIT) -  Glycogen phosphorylase, muscle form from Oryctolagus cuniculus
Seq:
Struc:
 
Seq:
Struc:
843 a.a.
814 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.2.4.1.1  - glycogen phosphorylase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Glycogen
      Reaction: [(1->4)-alpha-D-glucosyl](n) + phosphate = [(1->4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate
[(1->4)-alpha-D-glucosyl](n)
+ phosphate
= [(1->4)-alpha-D-glucosyl](n-1)
+
alpha-D-glucose 1-phosphate
Bound ligand (Het Group name = AMP)
matches with 50.00% similarity
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 

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