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PDBsum entry 3cos

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protein ligands metals Protein-protein interface(s) links
Oxidoreductase PDB id
3cos

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
379 a.a. *
Ligands
NAD ×4
EDO ×7
ACY ×5
Metals
_ZN ×8
Waters ×730
* Residue conservation analysis
PDB id:
3cos
Name: Oxidoreductase
Title: Crystal structure of human class ii alcohol dehydrogenase (adh4) in complex with NAD and zn
Structure: Alcohol dehydrogenase 4. Chain: a, b, c, d. Synonym: alcohol dehydrogenase class ii pi chain. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: adh4. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
2.10Å     R-factor:   0.170     R-free:   0.206
Authors: K.L.Kavanagh,N.Shafqat,W.Yue,F.Von Delft,S.Bishop,A.Roos,J.Murray, A.M.Edwards,C.H.Arrowsmith,C.Bountra,U.Oppermann,Structural Genomics Consortium (Sgc)
Key ref: K.L.Kavanagh et al. Crystal structure of human class ii alcohol dehydrogenase (adh4) in complex with NAD and zn.. To be published, .
Date:
29-Mar-08     Release date:   15-Apr-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P08319  (ADH4_HUMAN) -  All-trans-retinol dehydrogenase [NAD(+)] ADH4 from Homo sapiens
Seq:
Struc:
380 a.a.
379 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.1.1.1.105  - all-trans-retinol dehydrogenase (NAD(+)).
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: all-trans-retinol--[retinol-binding protein] + NAD+ = all-trans- retinal--[retinol-binding protein] + NADH + H+
all-trans-retinol--[retinol-binding protein]
+
NAD(+)
Bound ligand (Het Group name = NAD)
corresponds exactly
= all-trans- retinal--[retinol-binding protein]
+ NADH
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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