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PDBsum entry 2bv6

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Transcriptional regulator PDB id
2bv6

 

 

 

 

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Contents
Protein chain
137 a.a. *
Ligands
SO4
Waters ×9
* Residue conservation analysis
PDB id:
2bv6
Name: Transcriptional regulator
Title: Crystal structure of mgra, a global regulator and major virulence determinant in staphylococcus aureus
Structure: Hth-type transcriptional regulator mgra. Chain: a. Fragment: residues 5-142. Synonym: mgra. Engineered: yes
Source: Staphylococcus aureus. Organism_taxid: 1280. Strain: newman. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Biol. unit: Dimer (from PDB file)
Resolution:
2.80Å     R-factor:   0.250     R-free:   0.292
Authors: P.R.Chen,T.Bae,W.A.Williams,E.M.Duguid,P.A.Rice,O.Schneewind,C.He
Key ref:
P.R.Chen et al. (2006). An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus. Nat Chem Biol, 2, 591-595. PubMed id: 16980961 DOI: 10.1038/nchembio820
Date:
22-Jun-05     Release date:   20-Sep-06    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P0C1S0  (MGRA_STAAU) -  HTH-type transcriptional regulator MgrA from Staphylococcus aureus
Seq:
Struc:
147 a.a.
137 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 

 
DOI no: 10.1038/nchembio820 Nat Chem Biol 2:591-595 (2006)
PubMed id: 16980961  
 
 
An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus.
P.R.Chen, T.Bae, W.A.Williams, E.M.Duguid, P.A.Rice, O.Schneewind, C.He.
 
  ABSTRACT  
 
Staphylococcus aureus is a human pathogen responsible for most wound and hospital-acquired infections. The protein MgrA is both an important virulence determinant during infection and a regulator of antibiotic resistance in S. aureus. The crystal structure of the MgrA homodimer, solved at 2.86 A, indicates the presence of a unique cysteine residue located at the interface of the protein dimer. We discovered that this cysteine residue can be oxidized by various reactive oxygen species, such as hydrogen peroxide and organic hydroperoxide. Cysteine oxidation leads to dissociation of MgrA from DNA and initiation of signaling pathways that turn on antibiotic resistance in S. aureus. The oxidation-sensing mechanism is typically used by bacteria to counter challenges of reactive oxygen and nitrogen species. Our study reveals that in S. aureus, MgrA adopts a similar mechanism but uses it to globally regulate different defensive pathways.
 
  Selected figure(s)  
 
Figure 2.
(a) Ribbon representation of the MgrA dimer with one subunit colored blue and the dyadic mate colored green. The N and C termini and secondary structural elements of one monomer are labeled ( , -helices; , -sheets; W1, the wing region). Numbering is according to MgrA primary sequence (Supplementary Fig. 4). Potential DNA-interacting basic residues on the DNA binding domain are shown together with one ordered sulfate anion per monomer.
Figure 4.
(a,b) The change in susceptibility of S. aureus strains to ciprofloxacin (CIP) and vancomycin (VCM) under oxidative stress. The antibiotic resistance levels were tested in the absence (-H[2]O[2]) or presence (+H[2]O[2]) of 100 M H[2]O[2] by a plate sensitivity assay (a) and were also determined in the absence (-PQ) or presence (+PQ) of 25 M paraquat by a 96-well plate sensitivity assay (b). Under normal growth conditions (control) the five strains did not show noticeable differences. The wild-type strain and the mgrA mutant strain complemented with pYJ335-His-mgrA showed higher susceptibility toward CIP and VCM. Under oxidation conditions both strains showed increased resistance, comparable to that of the mgrA mutant strain, toward these antibiotics. In control experiments, the pYJ335-His-mgrAC12S–containing mutant strain did not change its susceptibility toward CIP and VCM under normal versus oxidative conditions. (c) Induction of norA, a gene regulated by mgrA, by oxidative stress. -Galactosidase activity of strains containing the norA-lacZ reporter fusion was determined in the wild-type (Newman) and mgrA mutant ( N 3040) strains and expressed in MUG units (MUG, 4-methylumbelliferyl- -D-galactopyranoside; 1 MUG unit = 1 pmol of MUG cleaved by -galactosidase per min per OD[600]). Empty bars are untreated cultures. Results are mean s.d. from three independent experiments performed in duplicate.
 
  The above figures are reprinted by permission from Macmillan Publishers Ltd: Nat Chem Biol (2006, 2, 591-595) copyright 2006.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20578795 P.R.Chen, P.Brugarolas, and C.He (2011).
Redox signaling in human pathogens.
  Antioxid Redox Signal, 14, 1107-1118.  
21187377 Z.Liu, M.Yang, G.L.Peterfreund, A.M.Tsou, N.Selamoglu, F.Daldal, Z.Zhong, B.Kan, and J.Zhu (2011).
Vibrio cholerae anaerobic induction of virulence gene expression is controlled by thiol-based switches of virulence regulator AphB.
  Proc Natl Acad Sci U S A, 108, 810-815.  
19854896 A.Ballal, and A.C.Manna (2010).
Control of thioredoxin reductase gene (trxB) transcription by SarA in Staphylococcus aureus.
  J Bacteriol, 192, 336-345.  
20095047 C.Andrésen, S.Jalal, D.Aili, Y.Wang, S.Islam, A.Jarl, B.Liedberg, B.Wretlind, L.G.Mårtensson, and M.Sunnerhagen (2010).
Critical biophysical properties in the Pseudomonas aeruginosa efflux gene regulator MexR are targeted by mutations conferring multidrug resistance.
  Protein Sci, 19, 680-692.  
20616806 H.Chen, C.Yi, J.Zhang, W.Zhang, Z.Ge, C.G.Yang, and C.He (2010).
Structural insight into the oxidation-sensing mechanism of the antibiotic resistance of regulator MexR.
  EMBO Rep, 11, 685-690.
PDB code: 3mex
20716550 I.C.Perera, and A.Grove (2010).
Molecular mechanisms of ligand-mediated attenuation of DNA binding by MarR family transcriptional regulators.
  J Mol Cell Biol, 2, 243-254.  
20400547 L.Lan, A.Cheng, P.M.Dunman, D.Missiakas, and C.He (2010).
Golden pigment production and virulence gene expression are affected by metabolisms in Staphylococcus aureus.
  J Bacteriol, 192, 3068-3077.  
19943895 L.Lan, T.S.Murray, B.I.Kazmierczak, and C.He (2010).
Pseudomonas aeruginosa OspR is an oxidative stress sensing regulator that affects pigment production, antibiotic resistance and dissemination during infection.
  Mol Microbiol, 75, 76-91.  
20233929 Q.C.Truong-Bolduc, and D.C.Hooper (2010).
Phosphorylation of MgrA and its effect on expression of the NorA and NorB efflux pumps of Staphylococcus aureus.
  J Bacteriol, 192, 2525-2534.  
20094649 V.Duarte, and J.M.Latour (2010).
PerR vs OhrR: selective peroxide sensing in Bacillus subtilis.
  Mol Biosyst, 6, 316-323.  
19389785 A.Ballal, and A.C.Manna (2009).
Expression of the sarA family of genes in different strains of Staphylococcus aureus.
  Microbiology, 155, 2342-2352.  
19286803 A.Ballal, and A.C.Manna (2009).
Regulation of superoxide dismutase (sod) genes by SarA in Staphylococcus aureus.
  J Bacteriol, 191, 3301-3310.  
19103928 A.Ballal, B.Ray, and A.C.Manna (2009).
sarZ, a sarA family gene, is transcriptionally activated by MgrA and is involved in the regulation of genes encoding exoproteins in Staphylococcus aureus.
  J Bacteriol, 191, 1656-1665.  
19586910 C.B.Poor, P.R.Chen, E.Duguid, P.A.Rice, and C.He (2009).
Crystal structures of the reduced, sulfenic acid, and mixed disulfide forms of SarZ, a redox active global regulator in Staphylococcus aureus.
  J Biol Chem, 284, 23517-23524.
PDB codes: 3hrm 3hse 3hsr
19487727 G.A.Somerville, and R.A.Proctor (2009).
At the crossroads of bacterial metabolism and virulence factor synthesis in Staphylococci.
  Microbiol Mol Biol Rev, 73, 233-248.  
19072553 M.P.Trotonda, Y.Q.Xiong, G.Memmi, A.S.Bayer, and A.L.Cheung (2009).
Role of mgrA and sarA in Methicillin-Resistant Staphylococcus aureus Autolysis and Resistance to Cell Wall-Active Antibiotics.
  J Infect Dis, 199, 209-218.  
19007410 P.R.Chen, S.Nishida, C.B.Poor, A.Cheng, T.Bae, L.Kuechenmeister, P.M.Dunman, D.Missiakas, and C.He (2009).
A new oxidative sensing and regulation pathway mediated by the MgrA homologue SarZ in Staphylococcus aureus.
  Mol Microbiol, 71, 198-211.  
19129220 W.Eiamphungporn, S.Soonsanga, J.W.Lee, and J.D.Helmann (2009).
Oxidation of a single active site suffices for the functional inactivation of the dimeric Bacillus subtilis OhrR repressor in vitro.
  Nucleic Acids Res, 37, 1174-1181.  
19788177 Z.Ma, F.E.Jacobsen, and D.P.Giedroc (2009).
Coordination chemistry of bacterial metal transport and sensing.
  Chem Rev, 109, 4644-4681.  
18083623 A.L.Cheung, K.A.Nishina, M.P.Trotonda, and S.Tamber (2008).
The SarA protein family of Staphylococcus aureus.
  Int J Biochem Cell Biol, 40, 355-361.  
18757728 H.Chen, J.Hu, P.R.Chen, L.Lan, Z.Li, L.M.Hicks, A.R.Dinner, and C.He (2008).
The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism.
  Proc Natl Acad Sci U S A, 105, 13586-13591.  
17954724 L.D.Handke, K.L.Rogers, M.E.Olson, G.A.Somerville, T.J.Jerrells, M.E.Rupp, P.M.Dunman, and P.D.Fey (2008).
Staphylococcus epidermidis saeR is an effector of anaerobic growth and a mediator of acute inflammation.
  Infect Immun, 76, 141-152.  
18812515 M.S.Wilke, M.Heller, A.L.Creagh, C.A.Haynes, L.P.McIntosh, K.Poole, and N.C.Strynadka (2008).
The crystal structure of MexR from Pseudomonas aeruginosa in complex with its antirepressor ArmR.
  Proc Natl Acad Sci U S A, 105, 14832-14837.
PDB code: 3ech
17848967 B.D'Autréaux, and M.B.Toledano (2007).
ROS as signalling molecules: mechanisms that generate specificity in ROS homeostasis.
  Nat Rev Mol Cell Biol, 8, 813-824.  
17502599 J.W.Lee, S.Soonsanga, and J.D.Helmann (2007).
A complex thiolate switch regulates the Bacillus subtilis organic peroxide sensor OhrR.
  Proc Natl Acad Sci U S A, 104, 8743-8748.  
18042459 K.J.Newberry, M.Fuangthong, W.Panmanee, S.Mongkolsuk, and R.G.Brennan (2007).
Structural mechanism of organic hydroperoxide induction of the transcription regulator OhrR.
  Mol Cell, 28, 652-664.
PDB codes: 2pex 2pfb
17660290 S.Soonsanga, M.Fuangthong, and J.D.Helmann (2007).
Mutational analysis of active site residues essential for sensing of organic hydroperoxides by Bacillus subtilis OhrR.
  J Bacteriol, 189, 7069-7076.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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