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PDBsum entry 2bns

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protein ligands metals Protein-protein interface(s) links
Photosynthesis PDB id
2bns

 

 

 

 

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Contents
Protein chains
281 a.a. *
302 a.a. *
237 a.a. *
Ligands
BCL ×4
BPH ×2
MST
U10
PO4 ×2
Metals
FE2
_CL
Waters ×94
* Residue conservation analysis
PDB id:
2bns
Name: Photosynthesis
Title: Lipidic cubic phase grown reaction centre from rhodobacter sphaeroides, excited state
Structure: Reaction center protein l chain. Chain: a. Synonym: photosynthetic reaction center l subunit. Reaction center protein m chain. Chain: b. Synonym: photosynthetic reaction center m subunit. Reaction center protein h chain. Chain: c. Synonym: photosynthetic reaction center h subunit
Source: Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Strain: r26
Biol. unit: Trimer (from PDB file)
Resolution:
2.50Å     R-factor:   0.211     R-free:   0.247
Authors: G.Katona,A.Snijder,P.Gourdon,U.Andreasson,O.Hansson,L.E.Andreasson, R.Neutze
Key ref:
G.Katona et al. (2005). Conformational regulation of charge recombination reactions in a photosynthetic bacterial reaction center. Nat Struct Mol Biol, 12, 630-631. PubMed id: 15937492 DOI: 10.1038/nsmb948
Date:
31-Mar-05     Release date:   27-May-05    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P0C0Y8  (RCEL_CERSP) -  Reaction center protein L chain from Cereibacter sphaeroides
Seq:
Struc:
282 a.a.
281 a.a.
Protein chain
Pfam   ArchSchema ?
P0C0Y9  (RCEM_CERSP) -  Reaction center protein M chain from Cereibacter sphaeroides
Seq:
Struc:
308 a.a.
302 a.a.
Protein chain
Pfam   ArchSchema ?
P0C0Y7  (RCEH_CERSP) -  Reaction center protein H chain from Cereibacter sphaeroides
Seq:
Struc:
260 a.a.
237 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1038/nsmb948 Nat Struct Mol Biol 12:630-631 (2005)
PubMed id: 15937492  
 
 
Conformational regulation of charge recombination reactions in a photosynthetic bacterial reaction center.
G.Katona, A.Snijder, P.Gourdon, U.Andréasson, O.Hansson, L.E.Andréasson, R.Neutze.
 
  ABSTRACT  
 
In bright light the photosynthetic reaction center (RC) of Rhodobacter sphaeroides stabilizes the P(+)(870).Q(-)(A) charge-separated state and thereby minimizes the potentially harmful effects of light saturation. Using X-ray diffraction we report a conformational change that occurs within the cytoplasmic domain of this RC in response to prolonged illumination with bright light. Our observations suggest a novel structural mechanism for the regulation of electron transfer reactions in photosynthesis.
 
  Selected figure(s)  
 
Figure 1.
Figure 1. Electron transfer reactions within the RC. Time scales are indicated. In bright light the recombination of the P+[870] Q-[A] charge-separated state is slowed from 100 ms to 250 s (red arrow).
Figure 2.
Figure 2. Structural changes within the RC in response to bright light. (a) Reproducible difference electron density features (yellow, negative density; blue, positive density) are large spheres (observed in all six difference Fourier maps) and small spheres (observed in five of six). Statistics are given in Supplementary Table 2 online. Arginines with increased trypsin susceptibility in bright light are red, and those with decreased susceptibility are blue. The H subunit is cyan. (b) Refined structural changes. Arrowheads indicate the relative magnitude and direction of the movements (blue, positively charged residues; red, negatively charged residues; gray, every fifth residue). Surface-exposed histidines are green, buried water molecules red and the C-terminal -helix gray. The subdomain from Pro121H to Thr226H (purple) experiences a net electrostatic force (yellow vector) due to interactions with Q-[A] (red).
 
  The above figures are reprinted by permission from Macmillan Publishers Ltd: Nat Struct Mol Biol (2005, 12, 630-631) copyright 2005.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20431017 A.B.Wöhri, G.Katona, L.C.Johansson, E.Fritz, E.Malmerberg, M.Andersson, J.Vincent, M.Eklund, M.Cammarata, M.Wulff, J.Davidsson, G.Groenhof, and R.Neutze (2010).
Light-induced structural changes in a photosynthetic reaction center caught by Laue diffraction.
  Science, 328, 630-633.
PDB codes: 2x5u 2x5v
20164644 S.Westenhoff, E.Nazarenko, E.Malmerberg, J.Davidsson, G.Katona, and R.Neutze (2010).
Time-resolved structural studies of protein reaction dynamics: a smorgasbord of X-ray approaches.
  Acta Crystallogr A, 66, 207-219.  
19351165 J.Belcher, S.Sansone, N.F.Fernandez, W.E.Haskins, L.Brancaleon, and L.Brancaleona (2009).
Photoinduced unfolding of beta-lactoglobulin mediated by a water-soluble porphyrin.
  J Phys Chem B, 113, 6020-6030.  
18611373 A.B.Wöhri, L.C.Johansson, P.Wadsten-Hindrichsen, W.Y.Wahlgren, G.Fischer, R.Horsefield, G.Katona, M.Nyblom, F.Oberg, G.Young, R.J.Cogdell, N.J.Fraser, S.Engström, and R.Neutze (2008).
A lipidic-sponge phase screen for membrane protein crystallization.
  Structure, 16, 1003-1009.  
18351331 P.Maróti (2008).
Kinetics and yields of bacteriochlorophyll fluorescence: redox and conformation changes in reaction center of Rhodobacter sphaeroides.
  Eur Biophys J, 37, 1175-1184.  
18351330 P.Maróti, and C.A.Wraight (2008).
The redox midpoint potential of the primary quinone of reaction centers in chromatophores of Rhodobacter sphaeroides is pH independent.
  Eur Biophys J, 37, 1207-1217.  
18073115 S.Törnroth-Horsefield, P.Gourdon, R.Horsefield, L.Brive, N.Yamamoto, H.Mori, A.Snijder, and R.Neutze (2007).
Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist.
  Structure, 15, 1663-1673.
PDB code: 2rdd
17959373 T.De la Mora-Rey, and C.M.Wilmot (2007).
Synergy within structural biology of single crystal optical spectroscopy and X-ray crystallography.
  Curr Opin Struct Biol, 17, 580-586.  
17149487 S.Sinnecker, M.Flores, and W.Lubitz (2006).
Protein-cofactor interactions in bacterial reaction centers from Rhodobacter sphaeroides R-26: effect of hydrogen bonding on the electronic and geometric structure of the primary quinone. A density functional theory study.
  Phys Chem Chem Phys, 8, 5659-5670.  
16129597 D.Bourgeois, and A.Royant (2005).
Advances in kinetic protein crystallography.
  Curr Opin Struct Biol, 15, 538-547.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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