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281 a.a.
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302 a.a.
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237 a.a.
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* Residue conservation analysis
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PDB id:
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Photosynthesis
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Title:
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Lipidic cubic phase grown reaction centre from rhodobacter sphaeroides, excited state
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Structure:
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Reaction center protein l chain. Chain: a. Synonym: photosynthetic reaction center l subunit. Reaction center protein m chain. Chain: b. Synonym: photosynthetic reaction center m subunit. Reaction center protein h chain. Chain: c. Synonym: photosynthetic reaction center h subunit
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Source:
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Rhodobacter sphaeroides. Organism_taxid: 1063. Strain: r26. Strain: r26
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Biol. unit:
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Trimer (from PDB file)
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Resolution:
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2.50Å
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R-factor:
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0.211
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R-free:
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0.247
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Authors:
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G.Katona,A.Snijder,P.Gourdon,U.Andreasson,O.Hansson,L.E.Andreasson, R.Neutze
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Key ref:
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G.Katona
et al.
(2005).
Conformational regulation of charge recombination reactions in a photosynthetic bacterial reaction center.
Nat Struct Mol Biol,
12,
630-631.
PubMed id:
DOI:
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Date:
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31-Mar-05
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Release date:
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27-May-05
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PROCHECK
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Headers
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References
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P0C0Y8
(RCEL_CERSP) -
Reaction center protein L chain from Cereibacter sphaeroides
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Seq: Struc:
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282 a.a.
281 a.a.
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DOI no:
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Nat Struct Mol Biol
12:630-631
(2005)
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PubMed id:
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Conformational regulation of charge recombination reactions in a photosynthetic bacterial reaction center.
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G.Katona,
A.Snijder,
P.Gourdon,
U.Andréasson,
O.Hansson,
L.E.Andréasson,
R.Neutze.
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ABSTRACT
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In bright light the photosynthetic reaction center (RC) of Rhodobacter
sphaeroides stabilizes the P(+)(870).Q(-)(A) charge-separated state and thereby
minimizes the potentially harmful effects of light saturation. Using X-ray
diffraction we report a conformational change that occurs within the cytoplasmic
domain of this RC in response to prolonged illumination with bright light. Our
observations suggest a novel structural mechanism for the regulation of electron
transfer reactions in photosynthesis.
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Selected figure(s)
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Figure 1.
Figure 1. Electron transfer reactions within the RC. Time
scales are indicated. In bright light the recombination of the
P+[870] Q-[A]
charge-separated state is slowed from 100 ms to 250 s (red
arrow).
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Figure 2.
Figure 2. Structural changes within the RC in response to bright
light. (a) Reproducible difference electron density features
(yellow, negative density; blue, positive density) are large
spheres (observed in all six difference Fourier maps) and small
spheres (observed in five of six). Statistics are given in
Supplementary Table 2 online. Arginines with increased trypsin
susceptibility in bright light are red, and those with decreased
susceptibility are blue. The H subunit is cyan. (b) Refined
structural changes. Arrowheads indicate the relative magnitude
and direction of the movements (blue, positively charged
residues; red, negatively charged residues; gray, every fifth
residue). Surface-exposed histidines are green, buried water
molecules red and the C-terminal -helix
gray. The subdomain from Pro121H to Thr226H (purple) experiences
a net electrostatic force (yellow vector) due to interactions
with Q-[A] (red).
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The above figures are
reprinted
by permission from Macmillan Publishers Ltd:
Nat Struct Mol Biol
(2005,
12,
630-631)
copyright 2005.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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A.B.Wöhri,
G.Katona,
L.C.Johansson,
E.Fritz,
E.Malmerberg,
M.Andersson,
J.Vincent,
M.Eklund,
M.Cammarata,
M.Wulff,
J.Davidsson,
G.Groenhof,
and
R.Neutze
(2010).
Light-induced structural changes in a photosynthetic reaction center caught by Laue diffraction.
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Science,
328,
630-633.
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PDB codes:
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S.Westenhoff,
E.Nazarenko,
E.Malmerberg,
J.Davidsson,
G.Katona,
and
R.Neutze
(2010).
Time-resolved structural studies of protein reaction dynamics: a smorgasbord of X-ray approaches.
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Acta Crystallogr A,
66,
207-219.
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J.Belcher,
S.Sansone,
N.F.Fernandez,
W.E.Haskins,
L.Brancaleon,
and
L.Brancaleona
(2009).
Photoinduced unfolding of beta-lactoglobulin mediated by a water-soluble porphyrin.
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J Phys Chem B,
113,
6020-6030.
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A.B.Wöhri,
L.C.Johansson,
P.Wadsten-Hindrichsen,
W.Y.Wahlgren,
G.Fischer,
R.Horsefield,
G.Katona,
M.Nyblom,
F.Oberg,
G.Young,
R.J.Cogdell,
N.J.Fraser,
S.Engström,
and
R.Neutze
(2008).
A lipidic-sponge phase screen for membrane protein crystallization.
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Structure,
16,
1003-1009.
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P.Maróti
(2008).
Kinetics and yields of bacteriochlorophyll fluorescence: redox and conformation changes in reaction center of Rhodobacter sphaeroides.
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Eur Biophys J,
37,
1175-1184.
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P.Maróti,
and
C.A.Wraight
(2008).
The redox midpoint potential of the primary quinone of reaction centers in chromatophores of Rhodobacter sphaeroides is pH independent.
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Eur Biophys J,
37,
1207-1217.
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S.Törnroth-Horsefield,
P.Gourdon,
R.Horsefield,
L.Brive,
N.Yamamoto,
H.Mori,
A.Snijder,
and
R.Neutze
(2007).
Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist.
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Structure,
15,
1663-1673.
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PDB code:
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T.De la Mora-Rey,
and
C.M.Wilmot
(2007).
Synergy within structural biology of single crystal optical spectroscopy and X-ray crystallography.
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Curr Opin Struct Biol,
17,
580-586.
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S.Sinnecker,
M.Flores,
and
W.Lubitz
(2006).
Protein-cofactor interactions in bacterial reaction centers from Rhodobacter sphaeroides R-26: effect of hydrogen bonding on the electronic and geometric structure of the primary quinone. A density functional theory study.
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Phys Chem Chem Phys,
8,
5659-5670.
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D.Bourgeois,
and
A.Royant
(2005).
Advances in kinetic protein crystallography.
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Curr Opin Struct Biol,
15,
538-547.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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}
}
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