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PDBsum entry 2bc8

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Toxin PDB id
2bc8

 

 

 

 

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Contents
Protein chain
12 a.a.
PDB id:
2bc8
Name: Toxin
Title: [Sec2,3,8,12]-imi
Structure: Alpha-conotoxin imi. Chain: a. Engineered: yes
Source: Synthetic: yes. Other_details: solid phase peptide synthesis
NMR struc: 20 models
Authors: C.J.Armishaw
Key ref:
C.J.Armishaw et al. (2006). Alpha-selenoconotoxins, a new class of potent alpha7 neuronal nicotinic receptor antagonists. J Biol Chem, 281, 14136-14143. PubMed id: 16500898 DOI: 10.1074/jbc.M512419200
Date:
18-Oct-05     Release date:   14-Mar-06    
PROCHECK
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 Headers
 References

Protein chain
P50983  (CA1_CONIM) -  Alpha-conotoxin ImI (Fragment) from Conus imperialis
Seq:
Struc:
17 a.a.
12 a.a.*
Key:    Secondary structure
* PDB and UniProt seqs differ at 4 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.?
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

 

 
DOI no: 10.1074/jbc.M512419200 J Biol Chem 281:14136-14143 (2006)
PubMed id: 16500898  
 
 
Alpha-selenoconotoxins, a new class of potent alpha7 neuronal nicotinic receptor antagonists.
C.J.Armishaw, N.L.Daly, S.T.Nevin, D.J.Adams, D.J.Craik, P.F.Alewood.
 
  ABSTRACT  
 
Disulfide bonds are important structural motifs that play an essential role in maintaining the conformational stability of many bioactive peptides. Of particular importance are the conotoxins, which selectively target a wide range of ion channels that are implicated in numerous disease states. Despite the enormous potential of conotoxins as therapeutics, their multiple disulfide bond frameworks are inherently unstable under reducing conditions. Reduction or scrambling by thiol-containing molecules such as glutathione or serum albumin in intracellular or extracellular environments such as blood plasma can decrease their effectiveness as drugs. To address this issue, we describe a new class of selenoconotoxins where cysteine residues are replaced by selenocysteine to form isosteric and nonreducible diselenide bonds. Three isoforms of alpha-conotoxin ImI were synthesized by t-butoxycarbonyl chemistry with systematic replacement of one ([Sec(2,8)]ImI or [Sec(3,12)]ImI), or both ([Sec(2,3,8,12)]ImI) disulfide bonds with a diselenide bond. Each analogue demonstrated remarkable stability to reduction or scrambling under a range of chemical and biological reducing conditions. Three-dimensional structural characterization by NMR and CD spectroscopy indicates conformational preferences that are very similar to those of native ImI, suggesting fully isomorphic structures. Additionally, full bioactivity was retained at the alpha7 nicotinic acetylcholine receptor, with each selenoanalogue exhibiting a dose-response curve that overlaps with wild-type ImI, thus further supporting an isomorphic structure. These results demonstrate that selenoconotoxins can be used as highly stable scaffolds for the design of new drugs.
 
  Selected figure(s)  
 
Figure 1.
α-Selenoconotoxin analogues of ImI. Connectivity between cysteine/selenocysteine residues is indicated.
Figure 3.
Structural studies of α-selenoconotoxin ImI analogues. Circular dichroism spectra (A) and a comparison of the NH (B) and Hα (C) backbone chemical shifts are shown. WT ImI shifts from Gehrmann et al. (24) were used. Secondary chemical shifts were calculated by subtracting random coil values (54) from the observed chemical shifts. •, WT ImI; ○, [Sec^2,8]ImI; ▴, [Sec^3,12]ImI; ▵, [Sec^2,3,8,12]ImI. D, overlay of the backbones (N, Cα, and CO atoms) and of the disulfide and diselenide bonds of the 20 minimum energy conformers representing the [Sec^2,8]ImI and [Sec^2,3,8,12]ImI NMR-derived structures. Disulfide bonds are shown in red, and diselenide bonds are shown in yellow. E, ribbon representations of [Sec^2,8]ImI and [Sec^2,3,8,12]ImI. WT ImI is shown for comparison (25). F, overlays of the minimum energy structures of [Sec^2,8]ImI and [Sec^2,3,8,12]ImI with WT ImI (left and middle, respectively) and overlay of [Sec^2,8]ImI on [Sec^2,3,8,12]ImI (right).
 
  The above figures are reprinted by permission from the ASBMB: J Biol Chem (2006, 281, 14136-14143) copyright 2006.  
  Figures were selected by the author.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20814907 A.M.Steiner, and G.Bulaj (2011).
Optimization of oxidative folding methods for cysteine-rich peptides: a study of conotoxins containing three disulfide bridges.
  J Pept Sci, 17, 1-7.  
20958922 A.Walewska, A.Jaśkiewicz, G.Bulaj, and K.Rolka (2011).
Selenopeptide analogs of EETI-II retain potent trypsin inhibitory activities.
  Chem Biol Drug Des, 77, 93-97.  
20649464 C.J.Armishaw, A.A.Jensen, L.D.Balle, K.C.Scott, L.Sørensen, and K.Strømgaard (2011).
Improving the stability of α-conotoxin AuIB through N-to-C cyclization: the effect of linker length on stability and activity at nicotinic acetylcholine receptors.
  Antioxid Redox Signal, 14, 65-76.  
20486767 E.S.Lovelace, S.Gunasekera, C.Alvarmo, R.J.Clark, S.T.Nevin, A.A.Grishin, D.J.Adams, D.J.Craik, and N.L.Daly (2011).
Stabilization of α-conotoxin AuIB: influences of disulfide connectivity and backbone cyclization.
  Antioxid Redox Signal, 14, 87-95.  
21439478 R.J.Clark, C.C.Tan, G.C.Preza, E.Nemeth, T.Ganz, and D.J.Craik (2011).
Understanding the structure/activity relationships of the iron regulatory peptide hepcidin.
  Chem Biol, 18, 336-343.  
20175537 K.H.Gowd, V.Yarotskyy, K.S.Elmslie, J.J.Skalicky, B.M.Olivera, and G.Bulaj (2010).
Site-specific effects of diselenide bridges on the oxidative folding of a cystine knot peptide, omega-selenoconotoxin GVIA.
  Biochemistry, 49, 2741-2752.  
20593464 M.Muttenthaler, Y.G.Ramos, D.Feytens, A.D.de Araujo, and P.F.Alewood (2010).
p-Nitrobenzyl protection for cysteine and selenocysteine: a more stable alternative to the acetamidomethyl group.
  Biopolymers, 94, 423-432.  
  20676359 T.S.Han, M.M.Zhang, K.H.Gowd, A.Walewska, D.Yoshikami, B.M.Olivera, and G.Bulaj (2010).
Disulfide-Depleted Selenoconopeptides: a Minimalist Strategy to Oxidative Folding of Cysteine-Rich Peptides.
  ACS Med Chem Lett, 1, 140-144.  
19585051 A.J.Robinson, B.J.van Lierop, R.D.Garland, E.Teoh, J.Elaridi, J.P.Illesinghe, and W.R.Jackson (2009).
Regioselective formation of interlocked dicarba bridges in naturally occurring cyclic peptide toxins using olefin metathesis.
  Chem Commun (Camb), (), 4293-4295.  
  19206132 A.Walewska, M.M.Zhang, J.J.Skalicky, D.Yoshikami, B.M.Olivera, and G.Bulaj (2009).
Integrated oxidative folding of cysteine/selenocysteine containing peptides: improving chemical synthesis of conotoxins.
  Angew Chem Int Ed Engl, 48, 2221-2224.  
19131337 C.Armishaw, A.A.Jensen, T.Balle, R.J.Clark, K.Harpsøe, C.Skonberg, T.Liljefors, and K.Strømgaard (2009).
Rational design of alpha-conotoxin analogues targeting alpha7 nicotinic acetylcholine receptors: improved antagonistic activity by incorporation of proline derivatives.
  J Biol Chem, 284, 9498-9512.  
19448650 L.Azam, and J.M.McIntosh (2009).
Alpha-conotoxins as pharmacological probes of nicotinic acetylcholine receptors.
  Acta Pharmacol Sin, 30, 771-783.  
19149490 R.L.Papke, and C.Smith-Maxwell (2009).
High throughput electrophysiology with Xenopus oocytes.
  Comb Chem High Throughput Screen, 12, 38-50.  
17961068 G.Bulaj, and B.M.Olivera (2008).
Folding of conotoxins: formation of the native disulfide bridges during chemical synthesis and biosynthesis of conus peptides.
  Antioxid Redox Signal, 10, 141-156.  
18951416 M.Muttenthaler, and P.F.Alewood (2008).
Selenopeptide chemistry.
  J Pept Sci, 14, 1223-1239.  
18294843 M.R.Levengood, and W.A.van der Donk (2008).
Use of lantibiotic synthetases for the preparation of bioactive constrained peptides.
  Bioorg Med Chem Lett, 18, 3025-3028.  
17462575 B.R.Green, P.Catlin, M.M.Zhang, B.Fiedler, W.Bayudan, A.Morrison, R.S.Norton, B.J.Smith, D.Yoshikami, B.M.Olivera, and G.Bulaj (2007).
Conotoxins containing nonnatural backbone spacers: cladistic-based design, chemical synthesis, and improved analgesic activity.
  Chem Biol, 14, 399-407.  
17295372 M.N.Romanelli, P.Gratteri, L.Guandalini, E.Martini, C.Bonaccini, and F.Gualtieri (2007).
Central Nicotinic Receptors: Structure, Function, Ligands, and Therapeutic Potential.
  ChemMedChem, 2, 746-767.  
17061249 O.Buczek, B.R.Green, and G.Bulaj (2007).
Albumin is a redox-active crowding agent that promotes oxidative folding of cysteine-rich peptides.
  Biopolymers, 88, 8.  
17177418 N.Metanis, E.Keinan, and P.E.Dawson (2006).
Synthetic seleno-glutaredoxin 3 analogues are highly reducing oxidoreductases with enhanced catalytic efficiency.
  J Am Chem Soc, 128, 16684-16691.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

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