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PDBsum entry 2z6b
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protein ligands Protein-protein interface(s) links
Hydrolase/structural protein PDB id
2z6b

 

 

 

 

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Contents
Protein chains
573 a.a. *
368 a.a. *
Ligands
NEN
Waters ×321
* Residue conservation analysis
PDB id:
2z6b
Name: Hydrolase/structural protein
Title: Crystal structure analysis of (gp27-gp5)3 conjugated with fe(iii) protoporphyrin
Structure: Tail-associated lysozyme. Chain: a. Synonym: protein gp5. Engineered: yes. Mutation: yes. Baseplate structural protein gp27. Chain: d. Synonym: hub protein 27. Engineered: yes
Source: Enterobacteria phage t4. Organism_taxid: 10665. Gene: 5. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008. Gene: 27.
Resolution:
3.11Å     R-factor:   0.243     R-free:   0.315
Authors: T.Koshiyama,N.Yokoi,T.Ueno,S.Kanamaru,S.Nagano,Y.Shiro,F.Arisaka, Y.Watanabe
Key ref: T.Koshiyama et al. (2008). Molecular design of heteroprotein assemblies providing a bionanocup as a chemical reactor. Small, 4, 50-54. PubMed id: 18098245
Date:
28-Jul-07     Release date:   15-Apr-08    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P16009  (BP5_BPT4) -  Pre-baseplate central spike protein Gp5 from Enterobacteria phage T4
Seq:
Struc: 		 
Seq:
Struc: 		575 a.a.
573 a.a.*
Protein chain
Pfam   ArchSchema ?
P17172  (BP27_BPT4) -  Baseplate central spike complex protein gp27 from Enterobacteria phage T4
Seq:
Struc: 		391 a.a.
368 a.a.
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: Chain A: E.C.3.2.1.17  - lysozyme.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Hydrolysis of the 1,4-beta-linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of the prokaryotes cell walls.

 

 
Small 4:50-54 (2008)
PubMed id: 18098245  
 
 
Molecular design of heteroprotein assemblies providing a bionanocup as a chemical reactor.
T.Koshiyama, N.Yokoi, T.Ueno, S.Kanamaru, S.Nagano, Y.Shiro, F.Arisaka, Y.Watanabe.
 
  ABSTRACT  
 
No abstract given.

 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21206940 N.Yokoi, Y.Miura, C.Y.Huang, N.Takatani, H.Inaba, T.Koshiyama, S.Kanamaru, F.Arisaka, Y.Watanabe, S.Kitagawa, and T.Ueno (2011).
Dual modification of a triple-stranded β-helix nanotube with Ru and Re metal complexes to promote photocatalytic reduction of CO2.
  Chem Commun (Camb), 47, 2074-2076.  
20661999 N.Yokoi, H.Inaba, M.Terauchi, A.Z.Stieg, N.J.Sanghamitra, T.Koshiyama, K.Yutani, S.Kanamaru, F.Arisaka, T.Hikage, A.Suzuki, T.Yamane, J.K.Gimzewski, Y.Watanabe, S.Kitagawa, and T.Ueno (2010).
Construction of robust bio-nanotubes using the controlled self-assembly of component proteins of bacteriophage T4.
  Small, 6, 1873-1879.
PDB code: 3a1m
19503942 T.Koshiyama, T.Ueno, S.Kanamaru, F.Arisaka, and Y.Watanabe (2009).
Construction of an energy transfer system in the bio-nanocup space by heteromeric assembly of gp27 and gp5 proteins isolated from bacteriophage T4.
  Org Biomol Chem, 7, 2649-2654.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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