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PDBsum entry 2gv7

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Hydrolase PDB id
2gv7

 

 

 

 

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Contents
Protein chain
241 a.a. *
Ligands
672
Waters ×152
* Residue conservation analysis
PDB id:
2gv7
Name: Hydrolase
Title: Structure of matriptase in complex with inhibitor cj-672
Structure: Suppressor of tumorigenicity 14. Chain: a. Synonym: serine protease 14, matriptase, membrane-type serine protease 1, mt-sp1, prostamin, serine protease tadg-15, tumor- associated differentially-expressed gene 15 protein. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: st14. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
Resolution:
2.20Å     R-factor:   0.197     R-free:   0.238
Authors: W.Bode
Key ref: T.Steinmetzer et al. (2006). Secondary amides of sulfonylated 3-amidinophenylalanine. New potent and selective inhibitors of matriptase. J Med Chem, 49, 4116-4126. PubMed id: 16821772 DOI: 10.1021/jm051272l
Date:
02-May-06     Release date:   06-Jun-06    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q9Y5Y6  (ST14_HUMAN) -  Suppressor of tumorigenicity 14 protein from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
855 a.a.
241 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.3.4.21.109  - matriptase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

 

 
DOI no: 10.1021/jm051272l J Med Chem 49:4116-4126 (2006)
PubMed id: 16821772  
 
 
Secondary amides of sulfonylated 3-amidinophenylalanine. New potent and selective inhibitors of matriptase.
T.Steinmetzer, A.Schweinitz, A.Stürzebecher, D.Dönnecke, K.Uhland, O.Schuster, P.Steinmetzer, F.Müller, R.Friedrich, M.E.Than, W.Bode, J.Stürzebecher.
 
  ABSTRACT  
 
Matriptase is an epithelium-derived type II transmembrane serine protease and has been implicated in the activation of substrates such as pro-HGF/SF and pro-uPA, which are likely involved in tumor progression and metastasis. Through screening, we have identified bis-basic secondary amides of sulfonylated 3-amidinophenylalanine as matriptase inhibitors. X-ray analyses of analogues 8 and 31 in complex with matriptase revealed that these inhibitors occupy, in addition to part of the previously described S4-binding site, the cleft formed by the molecular surface and the unique 60 loop of matriptase. Therefore, optimization of the inhibitors included the incorporation of appropriate sulfonyl substituents that could improve binding of these inhibitors into both characteristic matriptase subsites. The most potent derivatives inhibit matriptase highly selective with K(i) values below 5 nM. Molecular modeling revealed that their improved affinity results from interaction with the S4 site of matriptase. Analogues 8 and 59 were studied in an orthotopic xenograft mouse model of prostate cancer. Compared to control, both inhibitors reduced tumor growth, as well as tumor dissemination.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
20583861 J.Kotthaus, T.Steinmetzer, A.van de Locht, and B.Clement (2011).
Analysis of highly potent amidine containing inhibitors of serine proteases and their N-hydroxylated prodrugs (amidoximes).
  J Enzyme Inhib Med Chem, 26, 115-122.  
20473895 J.Napp, C.Dullin, F.Müller, K.Uhland, J.B.Petri, A.van de Locht, T.Steinmetzer, and F.Alves (2010).
Time-domain in vivo near infrared fluorescence imaging for evaluation of matriptase as a potential target for the development of novel, inhibitor-based tumor therapies.
  Int J Cancer, 127, 1958-1974.  
20015050 K.A.Owen, D.Qiu, J.Alves, A.M.Schumacher, L.M.Kilpatrick, J.Li, J.L.Harris, and V.Ellis (2010).
Pericellular activation of hepatocyte growth factor by the transmembrane serine proteases matriptase and hepsin, but not by the membrane-associated protease uPA.
  Biochem J, 426, 219-228.  
20704569 R.Ganesan, C.Eigenbrot, and D.Kirchhofer (2010).
Structural and mechanistic insight into how antibodies inhibit serine proteases.
  Biochem J, 430, 179-189.  
20507279 T.M.Antalis, M.S.Buzza, K.M.Hodge, J.D.Hooper, and S.Netzel-Arnett (2010).
The cutting edge: membrane-anchored serine protease activities in the pericellular microenvironment.
  Biochem J, 428, 325-346.  
19581128 S.Y.Choi, S.Bertram, I.Glowacka, Y.W.Park, and S.Pöhlmann (2009).
Type II transmembrane serine proteases in cancer and viral infections.
  Trends Mol Med, 15, 303-312.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

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