PDBsum entry 1vsc

Cell adhesion protein

PDB id

1vsc

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Contents

			Protein chain

					196 a.a. *

			Waters ×303

* Residue conservation analysis

PDB id:

1vsc

Links

Name:

Cell adhesion protein

Title:

Vcam-1

Structure:

Vascular cell adhesion molecule-1. Chain: a, b. Fragment: n-terminal two-domain fragment. Synonym: vcam-1. Engineered: yes. Mutation: yes. Other_details: hybrid molecule composed of vcam-1 domains 1 and 2 fused to igg, hinge and fc

Source:

Homo sapiens. Human. Organism_taxid: 9606. Gene: vcam-d1d2-ig. Expressed in: cricetulus griseus. Expression_system_taxid: 10029.

Biol. unit:

Dimer (from PQS)

Resolution:

1.90Å

R-factor:

0.204

R-free:

0.289

Authors:

J.Wang,T.Stehle,L.Osborn

Key ref:

J.H.Wang et al. (1995). The crystal structure of an N-terminal two-domain fragment of vascular cell adhesion molecule 1 (VCAM-1): a cyclic peptide based on the domain 1 C-D loop can inhibit VCAM-1-alpha 4 integrin interaction. Proc Natl Acad Sci U S A, 92, 5714-5718. PubMed id: 7539925 DOI: 10.1073/pnas.92.12.5714

Date:

27-Apr-95

Release date:

20-Jun-96

PROCHECK

	Headers

	References

Protein chains

P19320 (VCAM1_HUMAN) - Vascular cell adhesion protein 1 from Homo sapiens

Seq: Struc:

Seq: Struc:					739 a.a. 196 a.a.*

Key:

PfamA domain

Secondary structure

CATH domain

* PDB and UniProt seqs differ at 1 residue position (black cross)

DOI no: 10.1073/pnas.92.12.5714	Proc Natl Acad Sci U S A 92:5714-5718 (1995)
PubMed id: 7539925

The crystal structure of an N-terminal two-domain fragment of vascular cell adhesion molecule 1 (VCAM-1): a cyclic peptide based on the domain 1 C-D loop can inhibit VCAM-1-alpha 4 integrin interaction.
J.H.Wang, R.B.Pepinsky, T.Stehle, J.H.Liu, M.Karpusas, B.Browning, L.Osborn.

ABSTRACT

Vascular cell adhesion molecule 1 (VCAM-1) represents a structurally and functionally distinct class of immunoglobulin superfamily molecules that bind leukocyte integrins and are involved in inflammatory and immune functions. X-ray crystallography defines the three-dimensional structure of the N-terminal two-domain fragment that participates in ligand binding. Residues in domain 1 important for ligand binding reside in the C-D loop, which projects markedly from one face of the molecule near the contact between domains 1 and 2. A cyclic peptide that mimics this loop inhibits binding of alpha 4 beta 1 integrin-bearing cells to VCAM-1. These data demonstrate how crystallographic structural information can be used to design a small molecule inhibitor of biological function.

Literature references that cite this PDB file's key reference

PubMed id

Reference

18602404

K.Tan, M.Duquette, J.H.Liu, J.Lawler, and J.H.Wang (2008).
The crystal structure of the heparin-binding reelin-N domain of f-spondin.

J Mol Biol, 381, 1213-1223.

PDB code:

3coo

17942298

J.Takagi (2007).
Structural basis for ligand recognition by integrins.

Curr Opin Cell Biol, 19, 557-564.

12849298

R.Gold, M.C.Dalakas, and K.V.Toyka (2003).
Immunotherapy in autoimmune neuromuscular disorders.

Lancet Neurol, 2, 22-32.

11857637

H.Yusuf-Makagiansar, M.E.Anderson, T.V.Yakovleva, J.S.Murray, and T.J.Siahaan (2002).
Inhibition of LFA-1/ICAM-1 and VLA-4/VCAM-1 as a therapeutic approach to inflammation and autoimmune diseases.

Med Res Rev, 22, 146-167.

12231361

M.A.Arnaout, S.L.Goodman, and J.P.Xiong (2002).
Coming to grips with integrin binding to ligands.

Curr Opin Cell Biol, 14, 641-651.

11751331

T.J.You, D.S.Maxwell, T.P.Kogan, Q.Chen, J.Li, J.Kassir, G.W.Holland, and R.A.Dixon (2002).
A 3D structure model of integrin alpha 4 beta 1 complex: I. Construction of a homology model of beta 1 and ligand binding analysis.

Biophys J, 82, 447-457.

11668559

J.Boer, D.Gottschling, A.Schuster, B.Holzmann, and H.Kessler (2001).
Design, Synthesis, and Biological Evaluation of alpha(4)beta(1) Integrin Antagonists Based on beta-D-Mannose as Rigid Scaffold.

Angew Chem Int Ed Engl, 40, 3870-3873.

11327857

N.Assa-Munt, X.Jia, P.Laakkonen, and E.Ruoslahti (2001).
Solution structures and integrin binding activities of an RGD peptide with two isomers.

Biochemistry, 40, 2373-2378.

PDB codes:

1ful 1fuv

11679722

P.Taylor, M.Bilsland, and M.D.Walkinshaw (2001).
A new conformation of the integrin-binding fragment of human VCAM-1 crystallizes in a highly hydrated packing arrangement.

Acta Crystallogr D Biol Crystallogr, 57, 1579-1583.

PDB code:

1ij9

11352261

R.A.Carter, and I.P.Wicks (2001).
Vascular cell adhesion molecule 1 (CD106): a multifaceted regulator of joint inflammation.

Arthritis Rheum, 44, 985-994.

10673425

C.C.Deivanayagam, R.L.Rich, M.Carson, R.T.Owens, S.Danthuluri, T.Bice, M.Höök, and S.V.Narayana (2000).
Novel fold and assembly of the repetitive B region of the Staphylococcus aureus collagen-binding surface protein.

Structure, 8, 67-78.

PDB codes:

1d2o 1d2p

10790430

K.S.Taraszka, J.M.Higgins, K.Tan, D.A.Mandelbrot, J.H.Wang, and M.B.Brenner (2000).
Molecular basis for leukocyte integrin alpha(E)beta(7) adhesion to epithelial (E)-cadherin.

J Exp Med, 191, 1555-1567.

11007916

R.Kronenwett, S.Martin, and R.Haas (2000).
The role of cytokines and adhesion molecules for mobilization of peripheral blood stem cells.

Stem Cells, 18, 320-330.

10442767

F.Peri, D.Grell, P.Dumy, Y.Yokokawa, K.Welzenbach, G.Weitz-Schmidt, and M.Mutter (1999).
Assembly of binding loops on aromatic templates as VCAM-1 mimetics.

J Pept Sci, 5, 313-322.

10382673

H.Lu, and K.Schulten (1999).
Steered molecular dynamics simulations of force-induced protein domain unfolding.

Proteins, 35, 453-463.

10077629

J.M.Casasnovas, C.Pieroni, and T.A.Springer (1999).
Lymphocyte function-associated antigen-1 binding residues in intercellular adhesion molecule-2 (ICAM-2) and the integrin binding surface in the ICAM subfamily.

Proc Natl Acad Sci U S A, 96, 3017-3022.

10440992

S.McDonald, N.G.Carlson, L.C.Gahring, K.R.Ely, and S.W.Rogers (1999).
A model for a glutamate receptor agonist antibody-binding site.

J Mol Recognit, 12, 219-225.

9539703

J.Bella, P.R.Kolatkar, C.W.Marlor, J.M.Greve, and M.G.Rossmann (1998).
The structure of the two amino-terminal domains of human ICAM-1 suggests how it functions as a rhinovirus receptor and as an LFA-1 integrin ligand.

Proc Natl Acad Sci U S A, 95, 4140-4145.

PDB code:

1iam

9539702

J.M.Casasnovas, T.Stehle, J.H.Liu, J.H.Wang, and T.A.Springer (1998).
A dimeric crystal structure for the N-terminal two domains of intercellular adhesion molecule-1.

Proc Natl Acad Sci U S A, 95, 4134-4139.

PDB code:

1ic1

9425167

J.M.Higgins, D.A.Mandlebrot, S.K.Shaw, G.J.Russell, E.A.Murphy, Y.T.Chen, W.J.Nelson, C.M.Parker, and M.B.Brenner (1998).
Direct and regulated interaction of integrin alphaEbeta7 with E-cadherin.

J Cell Biol, 140, 197-210.

9700512

J.Wang, and T.A.Springer (1998).
Structural specializations of immunoglobulin superfamily members for adhesion to integrins and viruses.

Immunol Rev, 163, 197-215.

9628736

L.L.Chen, R.R.Lobb, J.H.Cuervo, K.Lin, S.P.Adams, and R.B.Pepinsky (1998).
Identification of ligand binding sites on integrin alpha4beta1 through chemical cross-linking.

Biochemistry, 37, 8743-8753.

9525318

S.L.Hart, C.V.Arancibia-Cárcamo, M.A.Wolfert, C.Mailhos, N.J.O'Reilly, R.R.Ali, C.Coutelle, A.J.George, R.P.Harbottle, A.M.Knight, D.F.Larkin, R.J.Levinsky, L.W.Seymour, A.J.Thrasher, and C.Kinnon (1998).
Lipid-mediated enhancement of transfection by a nonviral integrin-targeting vector.

Hum Gene Ther, 9, 575-585.

9242926

C.Chothia, and E.Y.Jones (1997).
The molecular structure of cell adhesion molecules.

Annu Rev Biochem, 66, 823-862.

9151947

C.G.Gahmberg, M.Tolvanen, and P.Kotovuori (1997).
Leukocyte adhesion--structure and function of human leukocyte beta2-integrins and their cellular ligands.

Eur J Biochem, 245, 215-232.

9442878

D.J.Leahy (1997).
Implications of atomic-resolution structures for cell adhesion.

Annu Rev Cell Dev Biol, 13, 363-393.

9084132

G.Kadmon, and P.Altevogt (1997).
The cell adhesion molecule L1: species- and cell-type-dependent multiple binding mechanisms.

Differentiation, 61, 143-150.

9379078

S.Fong, S.Jones, M.E.Renz, H.H.Chiu, A.M.Ryan, L.G.Presta, and D.Jackson (1997).
Mucosal addressin cell adhesion molecule-1 (MAdCAM-1). Its binding motif for alpha 4 beta 7 and role in experimental colitis.

Immunol Res, 16, 299-311.

8636223

A.M.Montgomery, J.C.Becker, C.H.Siu, V.P.Lemmon, D.A.Cheresh, J.D.Pancook, X.Zhao, and R.A.Reisfeld (1996).
Human neural cell adhesion molecule L1 and rat homologue NILE are ligands for integrin alpha v beta 3.

J Cell Biol, 132, 475-485.

8939654

E.Y.Jones (1996).
Three-dimensional structure of cell adhesion molecules.

Curr Opin Cell Biol, 8, 602-608.

8749360

D.I.Stuart, and E.Y.Jones (1995).
Recognition at the cell surface: recent structural insights.

Curr Opin Struct Biol, 5, 735-743.

The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.