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PDBsum entry 1vji
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Plant protein
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PDB id
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1vji
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Contents |
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* Residue conservation analysis
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Enzyme class:
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E.C.1.3.1.42
- 12-oxophytodienoate reductase.
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Reaction:
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(1S,2S)-OPC-8 + NADP+ = (9S,13S,15Z)-12-oxophyto-10,15-dienoate + NADPH + H+
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(1S,2S)-OPC-8
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+
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NADP(+)
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=
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(9S,13S,15Z)-12-oxophyto-10,15-dienoate
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+
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NADPH
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+
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H(+)
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Molecule diagrams generated from .mol files obtained from the
KEGG ftp site
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DOI no:
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Proteins
61:206-208
(2005)
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PubMed id:
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X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1.
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B.G.Fox,
T.E.Malone,
K.A.Johnson,
S.E.Madson,
D.Aceti,
C.A.Bingman,
P.G.Blommel,
B.Buchan,
B.Burns,
J.Cao,
C.Cornilescu,
J.Doreleijers,
J.Ellefson,
R.Frederick,
H.Geetha,
D.Hruby,
W.B.Jeon,
T.Kimball,
J.Kunert,
J.L.Markley,
C.Newman,
A.Olson,
F.C.Peterson,
G.N.Phillips,
J.Primm,
B.Ramirez,
N.S.Rosenberg,
M.Runnels,
K.Seder,
J.Shaw,
D.W.Smith,
H.Sreenath,
J.Song,
M.R.Sussman,
S.Thao,
D.Troestler,
E.Tyler,
R.Tyler,
E.Ulrich,
D.Vinarov,
F.Vojtik,
B.F.Volkman,
G.Wesenberg,
R.L.Wrobel,
J.Zhang,
Q.Zhao,
Z.Zolnai.
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ABSTRACT
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Selected figure(s)
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Figure 1.
Figure 1. A: Stereo representation of the X-ray structure of
Arabidopsis OPR1 (1VJI) showing the position of FMN and the
putative substrate-binding loop (violet). B: comparison of the
positions of the putative substrate-binding loop of OPR1
(violet) with those observed in structures of Lycopersicon
esculentum (tomato) OPR1 (grey) and Arabidopsis OPR3 (green).
Positions obtained from alignment of the backbone atoms of each
structure with Arabidopsis OPR1. The position of bound
9R,13R-OPDA in the 1ICQ structure is also shown (grey).The
Arabidopsis OPR1 loop consists of P132-P149, the tomato OPR1
loop consists of residues G136-R153, and the Arabidopsis OPR3
loop consists of I133-Y150. In the tomato OPR1 loop, the
backbone traces from 1ICQ (with 9R, 13R-OPDA bound) and 1ICS
(with PEG bound) are indistinguishable.
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The above figure is
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2005,
61,
206-208)
copyright 2005.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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W.Li,
B.Liu,
L.Yu,
D.Feng,
H.Wang,
and
J.Wang
(2009).
Phylogenetic analysis, structural evolution and functional divergence of the 12-oxo-phytodienoate acid reductase gene family in plants.
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BMC Evol Biol,
9,
90.
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C.Breithaupt,
R.Kurzbauer,
H.Lilie,
A.Schaller,
J.Strassner,
R.Huber,
P.Macheroux,
and
T.Clausen
(2006).
Crystal structure of 12-oxophytodienoate reductase 3 from tomato: self-inhibition by dimerization.
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Proc Natl Acad Sci U S A,
103,
14337-14342.
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PDB codes:
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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Links
