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PDBsum entry 1vgm

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protein ligands Protein-protein interface(s) links
Transferase PDB id
1vgm

 

 

 

 

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Contents
Protein chains
376 a.a. *
Ligands
SO4
GOL
Waters ×341
* Residue conservation analysis
PDB id:
1vgm
Name: Transferase
Title: Crystal structure of an isozyme of citrate synthase from sulfolbus tokodaii strain7
Structure: 378aa long hypothetical citrate synthase. Chain: a, b. Engineered: yes
Source: Sulfolobus tokodaii. Organism_taxid: 111955. Gene: strain7. Expressed in: escherichia coli. Expression_system_taxid: 562.
Biol. unit: Dimer (from PQS)
Resolution:
2.00Å     R-factor:   0.196     R-free:   0.231
Authors: M.Murakami,K.Ihara,T.Kouyama
Key ref: M.Murakami and T.Kouyama (2016). Crystal Structures of Two Isozymes of Citrate Synthase from Sulfolobus tokodaii Strain 7. Biochem Res Int, 2016, 7560919. PubMed id: 27656296
Date:
27-Apr-04     Release date:   28-Jun-05    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q96ZM7  (Q96ZM7_SULTO) -  Citrate synthase from Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Seq:
Struc:
378 a.a.
376 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.3.3.16  - citrate synthase (unknown stereospecificity).
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: oxaloacetate + acetyl-CoA + H2O = citrate + CoA + H+
oxaloacetate
+ acetyl-CoA
+ H2O
Bound ligand (Het Group name = GOL)
matches with 50.00% similarity
= citrate
+ CoA
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
Biochem Res Int 2016:7560919 (2016)
PubMed id: 27656296  
 
 
Crystal Structures of Two Isozymes of Citrate Synthase from Sulfolobus tokodaii Strain 7.
M.Murakami, T.Kouyama.
 
  ABSTRACT  
 
Thermoacidophilic archaeon Sulfolobus tokodaii strain 7 has two citrate synthase genes (ST1805-CS and ST0587-CS) in the genome with 45% sequence identity. Because they exhibit similar optimal temperatures of catalytic activity and thermal inactivation profiles, we performed structural comparisons between these isozymes to elucidate adaptation mechanisms to high temperatures in thermophilic CSs. The crystal structures of ST1805-CS and ST0587-CS were determined at 2.0 Å and 2.7 Å resolutions, respectively. Structural comparison reveals that both of them are dimeric enzymes composed of two identical subunits, and these dimeric structures are quite similar to those of citrate synthases from archaea and eubacteria. ST0587-CS has, however, 55 ion pairs within whole dimer structure, while having only 36 in ST1805-CS. Although the number and distributions of ion pairs are distinct from each other, intersubunit ion pairs between two domains of each isozyme are identical especially in interterminal region. Because the location and number of ion pairs are in a trend with other CSs from thermophilic microorganisms, the factors responsible for thermal adaptation of ST-CS isozymes are characterized by ion pairs in interterminal region.
 

 

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