PDBsum entry 1v3y

Hydrolase

PDB id: 1v3y

Contents

Protein chains

170 a.a. *

Waters ×294

* Residue conservation analysis

PDB id:

1v3y

Name:

Hydrolase

Title:

The crystal structure of peptide deformylase from thermus thermophilus hb8

Structure:

Peptide deformylase. Chain: a, b. Synonym: pdf, polypeptide deformylase. Engineered: yes

Source:

Thermus thermophilus. Organism_taxid: 274. Expressed in: escherichia coli. Expression_system_taxid: 562.

Resolution:

1.81Å R-factor: 0.173 R-free: 0.208

Authors:

M.Kamo,N.Kudo,W.C.Lee,K.Ito,H.Motoshim,M.Tanokura,Riken Structural Genomics/proteomics Initiative (Rsgi)

Key ref:

M.Kamo et al. The crystal structure of peptide deformylase from thermus thermophilus hb8. To be published, .

Date:

07-Nov-03 Release date: 28-Dec-04

Protein chains

P43522  (DEF_THETH) -  Peptide deformylase from Thermus thermophilus

Seq: 192 a.a.

Struc: 170 a.a.*

* PDB and UniProt seqs differ at 1 residue position (black cross)

Enzyme reactions

• Enzyme class: E.C.3.5.1.88 - peptide deformylase.
• Reaction: N-terminal N-formyl-L-methionyl-[peptide] + H2O = N-terminal L-methionyl- [peptide] + formate
• Cofactor: Fe(2+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site