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PDBsum entry 1stm
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Nat Struct Biol
2:882-890
(1995)
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PubMed id:
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The structure of satellite panicum mosaic virus at 1.9 A resolution.
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N.Ban,
A.McPherson.
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ABSTRACT
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The crystal structure of satellite panicum mosaic virus (SPMV) has been solved
by multiple isomorphous replacement and molecular replacement and refined at 1.9
A resolution. SPMV, a T = 1 icosahedral virus, is the smallest virus structure
determined. The coat protein is an eight-stranded 'jelly roll' beta-barrel with
an amino-terminal strand that extends into the interior of the virus, presumably
interacting with the RNA. Regions of electron density on the interior of the
protein capsid may be RNA, although it is not possible to construct any detailed
model of the nucleic acid. Basic amino acid residues in contact with the nucleic
acid show a considerable degree of disorder. The carboxy-terminal strand of the
virus coat protein interacts with adjacent subunits, forming an additional
beta-strand.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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D.Qi,
and
K.B.Scholthof
(2008).
Multiple activities associated with the capsid protein of satellite panicum mosaic virus are controlled separately by the N- and C-terminal regions.
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Mol Plant Microbe Interact,
21,
613-621.
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K.Kakani,
R.Reade,
U.Katpally,
T.Smith,
and
D.Rochon
(2008).
Induction of particle polymorphism by cucumber necrosis virus coat protein mutants in vivo.
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J Virol,
82,
1547-1557.
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I.André,
P.Bradley,
C.Wang,
and
D.Baker
(2007).
Prediction of the structure of symmetrical protein assemblies.
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Proc Natl Acad Sci U S A,
104,
17656-17661.
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Y.Tsai,
M.R.Sawaya,
G.C.Cannon,
F.Cai,
E.B.Williams,
S.Heinhorst,
C.A.Kerfeld,
and
T.O.Yeates
(2007).
Structural analysis of CsoS1A and the protein shell of the Halothiobacillus neapolitanus carboxysome.
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PLoS Biol,
5,
e144.
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PDB codes:
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P.Vijaya Palani,
V.Kasiviswanathan,
J.C.Chen,
W.Chen,
Y.H.Hsu,
and
N.S.Lin
(2006).
The arginine-rich motif of Bamboo mosaic virus satellite RNA-encoded P20 mediates self-interaction, intracellular targeting, and cell-to-cell movement.
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Mol Plant Microbe Interact,
19,
758-767.
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D.L.Makino,
S.B.Larson,
and
A.McPherson
(2005).
Preliminary analysis of crystals of panicum mosaic virus (PMV) by X-ray diffraction and atomic force microscopy.
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Acta Crystallogr D Biol Crystallogr,
61,
173-179.
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Y.G.Kuznetsov,
D.L.Makino,
A.J.Malkin,
and
A.McPherson
(2005).
The incorporation of large impurities into virus crystals.
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Acta Crystallogr D Biol Crystallogr,
61,
720-723.
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A.Stocker,
T.Tomizaki,
C.Schulze-Briese,
and
U.Baumann
(2002).
Crystal structure of the human supernatant protein factor.
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Structure,
10,
1533-1540.
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PDB code:
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W.Qiu,
and
K.B.Scholthof
(2001).
Genetic identification of multiple biological roles associated with the capsid protein of satellite panicum mosaic virus.
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Mol Plant Microbe Interact,
14,
21-30.
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M.S.Tsai,
Y.H.Hsu,
and
N.S.Lin
(1999).
Bamboo mosaic potexvirus satellite RNA (satBaMV RNA)-encoded P20 protein preferentially binds to satBaMV RNA.
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J Virol,
73,
3032-3039.
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L.Liljas
(1996).
Viruses.
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Curr Opin Struct Biol,
6,
151-156.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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Links
