spacer
spacer

PDBsum entry 1pv3

Go to PDB code: 
protein links
Transferase PDB id
1pv3

 

 

 

 

Loading ...

 
JSmol PyMol  
Contents
Protein chain
146 a.a. *
* Residue conservation analysis
PDB id:
1pv3
Name: Transferase
Title: Nmr solution structure of the avian fat-domain of focal adhesion kinase
Structure: Focal adhesion kinase 1. Chain: a. Fragment: focal adhesion targeting (fat) domain. Synonym: fadk 1, pp125fak. Engineered: yes
Source: Gallus gallus. Chicken. Organism_taxid: 9031. Gene: fak1 or fak. Expressed in: escherichia coli bl21(de3). Expression_system_taxid: 469008.
NMR struc: 20 models
Authors: K.C.Prutzman,G.Gao,M.L.King,V.V.Iyer,G.A.Mueller,M.D.Schaller, S.L.Campbell
Key ref:
K.C.Prutzman et al. (2004). The focal adhesion targeting domain of focal adhesion kinase contains a hinge region that modulates tyrosine 926 phosphorylation. Structure, 12, 881-891. PubMed id: 15130480 DOI: 10.1016/j.str.2004.02.028
Date:
26-Jun-03     Release date:   25-May-04    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q00944  (FAK1_CHICK) -  Focal adhesion kinase 1 from Gallus gallus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1053 a.a.
146 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 12 residue positions (black crosses)

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.2  - non-specific protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1016/j.str.2004.02.028 Structure 12:881-891 (2004)
PubMed id: 15130480  
 
 
The focal adhesion targeting domain of focal adhesion kinase contains a hinge region that modulates tyrosine 926 phosphorylation.
K.C.Prutzman, G.Gao, M.L.King, V.V.Iyer, G.A.Mueller, M.D.Schaller, S.L.Campbell.
 
  ABSTRACT  
 
The focal adhesion targeting (FAT) domain of focal adhesion kinase (FAK) is critical for recruitment of FAK to focal adhesions and contains tyrosine 926, which, when phosphorylated, binds the SH2 domain of Grb2. Structural studies have shown that the FAT domain is a four-helix bundle that exists as a monomer and a dimer due to domain swapping of helix 1. Here, we report the NMR solution structure of the avian FAT domain, which is similar in overall structure to the X-ray crystal structures of monomeric forms of the FAT domain, except that loop 1 is longer and less structured in solution. Residues in this region undergo temperature-dependent exchange broadening and sample aberrant phi and psi angles, which suggests that this region samples multiple conformations. We have also identified a mutant that dimerizes approximately 8 fold more than WT FAT domain and exhibits increased phosphorylation of tyrosine 926 both in vitro and in vivo.
 
  Selected figure(s)  
 
Figure 1.
Figure 1. Solution Structure of the Avian FAT Domain(A) Backbone atom trace of the 20 lowest energy solution structures of the avian FAT domain (residues 920-1053), with a 12 amino acid linker at the amino terminus remaining from purification.(B) The backbone trace of the avian FAT domain minus the 12 amino acid linker. The proposed hinge region (residues 941-951) is colored red.(C) Expanded view of the hinge region, which contains three prolines (P945, P947, and P948, in red).
 
  The above figure is reprinted by permission from Cell Press: Structure (2004, 12, 881-891) copyright 2004.  
  Figure was selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20668527 C.F.Dibble, J.A.Horst, M.H.Malone, K.Park, B.Temple, H.Cheeseman, J.R.Barbaro, G.L.Johnson, and S.Bencharit (2010).
Defining the functional domain of programmed cell death 10 through its interactions with phosphatidylinositol-3,4,5-trisphosphate.
  PLoS One, 5, e11740.  
  18171471 D.M.Scheswohl, J.R.Harrell, Z.Rajfur, G.Gao, S.L.Campbell, and M.D.Schaller (2008).
Multiple paxillin binding sites regulate FAK function.
  J Mol Signal, 3, 1.  
17922492 P.M.Siesser, L.M.Meenderink, L.Ryzhova, K.E.Michael, D.W.Dumbauld, A.J.García, I.Kaverina, and S.K.Hanks (2008).
A FAK/Src chimera with gain-of-function properties promotes formation of large peripheral adhesions associated with dynamic actin assembly.
  Cell Motil Cytoskeleton, 65, 25-39.  
18448431 Z.M.Zhang, J.A.Simmerman, C.D.Guibao, and J.J.Zheng (2008).
GIT1 paxillin-binding domain is a four-helix bundle, and it binds to both paxillin LD2 and LD4 motifs.
  J Biol Chem, 283, 18685-18693.
PDB code: 2jx0
17093062 F.Chang, C.A.Lemmon, D.Park, and L.H.Romer (2007).
FAK potentiates Rac1 activation and localization to matrix adhesion sites: a role for betaPIX.
  Mol Biol Cell, 18, 253-264.  
16847103 D.M.Pirone, W.F.Liu, S.A.Ruiz, L.Gao, S.Raghavan, C.A.Lemmon, L.H.Romer, and C.S.Chen (2006).
An inhibitory role for FAK in regulating proliferation: a link between limited adhesion and RhoA-ROCK signaling.
  J Cell Biol, 174, 277-288.  
16407060 F.Ding, K.C.Prutzman, S.L.Campbell, and N.V.Dokholyan (2006).
Topological determinants of protein domain swapping.
  Structure, 14, 5.  
15795225 K.Briknarová, F.Nasertorabi, M.L.Havert, E.Eggleston, D.W.Hoyt, C.Li, A.J.Olson, K.Vuori, and K.R.Ely (2005).
The serine-rich domain from Crk-associated substrate (p130cas) is a four-helix bundle.
  J Biol Chem, 280, 21908-21914.
PDB code: 1z23
15688067 S.K.Mitra, D.A.Hanson, and D.D.Schlaepfer (2005).
Focal adhesion kinase: in command and control of cell motility.
  Nat Rev Mol Cell Biol, 6, 56-68.  
15576030 R.D.Dixon, Y.Chen, F.Ding, S.D.Khare, K.C.Prutzman, M.D.Schaller, S.L.Campbell, and N.V.Dokholyan (2004).
New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate.
  Structure, 12, 2161-2171.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

spacer

spacer