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PDBsum entry 1kpc

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protein Protein-protein interface(s) links
Protein kinasE C interacting protein PDB id
1kpc

 

 

 

 

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Contents
Protein chain
111 a.a. *
Waters ×294
* Residue conservation analysis
PDB id:
1kpc
Name: Protein kinasE C interacting protein
Title: Pkci-1-apo+zinc
Structure: Human protein kinasE C interacting protein 1 (zinc protein). Chain: a, b, c, d. Synonym: pkci-1, protein kinasE C inhibitor 1. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: hpkci-1. Expressed in: pichia pastoris. Expression_system_taxid: 4922. Other_details: expressed as an acetylated protein on amino acid 2. This is similar to the native protein purified directly from bovine brain.
Biol. unit: Dimer (from PQS)
Resolution:
2.20Å     R-factor:   0.217     R-free:   0.309
Authors: C.D.Lima,M.G.Klein,I.B.Weinstein,W.A.Hendrickson
Key ref: C.D.Lima et al. (1996). Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins. Proc Natl Acad Sci U S A, 93, 5357-5362. PubMed id: 8643579
Date:
06-Jan-96     Release date:   11-Jul-96    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
P49773  (HINT1_HUMAN) -  Adenosine 5'-monophosphoramidase HINT1 from Homo sapiens
Seq:
Struc:
126 a.a.
111 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class 2: E.C.3.4.22.-  - ?????
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
   Enzyme class 3: E.C.3.9.1.-  - ?????
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.

 

 
Proc Natl Acad Sci U S A 93:5357-5362 (1996)
PubMed id: 8643579  
 
 
Three-dimensional structure of human protein kinase C interacting protein 1, a member of the HIT family of proteins.
C.D.Lima, M.G.Klein, I.B.Weinstein, W.A.Hendrickson.
 
  ABSTRACT  
 
The three-dimensional structure of protein kinase C interacting protein 1 (PKCI-1) has been solved to high resolution by x-ray crystallography using single isomorphous replacement with anomalous scattering. The gene encoding human PKCI-1 was cloned from a cDNA library by using a partial sequence obtained from interactions identified in the yeast two-hybrid system between PKCI-1 and the regulatory domain of protein kinase C-beta. The PKCI-1 protein was expressed in Pichia pastoris as a dimer of two 13.7-kDa polypeptides. PKCI-1 is a member of the HIT family of proteins, shown by sequence identity to be conserved in a broad range of organisms including mycoplasma, plants, and humans. Despite the ubiquity of this protein sequence in nature, no distinct function has been shown for the protein product in vitro or in vivo. The PKCI-1 protomer has an alpha+beta meander fold containing a five-stranded antiparallel sheet and two helices. Two protomers come together to form a 10-stranded antiparallel sheet with extensive contacts between a helix and carboxy terminal amino acids of a protomer with the corresponding amino acids in the other protomer. PKCI-1 has been shown to interact specifically with zinc. The three-dimensional structure has been solved in the presence and absence of zinc and in two crystal forms. The structure of human PKCI-1 provides a model of this family of proteins which suggests a stable fold conserved throughout nature.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
21316334 J.Martin, M.V.St-Pierre, and J.F.Dufour (2011).
Hit proteins, mitochondria and cancer.
  Biochim Biophys Acta, 1807, 626-632.  
21035495 K.Huebner, J.C.Saldivar, J.Sun, H.Shibata, and T.Druck (2011).
Hits, Fhits and Nits: Beyond enzymatic function.
  Adv Enzyme Regul, 51, 208-217.  
19912621 E.Barbier, and J.B.Wang (2009).
Anti-depressant and anxiolytic like behaviors in PKCI/HINT1 knockout mice associated with elevated plasma corticosterone level.
  BMC Neurosci, 10, 132.  
18852295 H.Li, A.S.Balajee, T.Su, B.Cen, T.K.Hei, and I.B.Weinstein (2008).
The HINT1 tumor suppressor regulates both gamma-H2AX and ATM in response to DNA damage.
  J Cell Biol, 183, 253-265.  
19050785 I.N.Jakab, O.Lorincz, A.Jancsó, T.Gajda, and B.Gyurcsik (2008).
Approaching the minimal metal ion binding peptide for structural and functional metalloenzyme mimicking.
  Dalton Trans, (), 6987-6995.  
18270824 Q.Liu, A.C.Puche, and J.B.Wang (2008).
Distribution and expression of protein kinase C interactive protein (PKCI/HINT1) in mouse central nervous system (CNS).
  Neurochem Res, 33, 1263-1276.  
18836178 U.Rass, I.Ahel, and S.C.West (2008).
Molecular mechanism of DNA deadenylation by the neurological disease protein aprataxin.
  J Biol Chem, 283, 33994-34001.  
17203012 E.Barbier, A.Zapata, E.Oh, Q.Liu, F.Zhu, A.Undie, T.Shippenberg, and J.B.Wang (2007).
Supersensitivity to amphetamine in protein kinase-C interacting protein/HINT1 knockout mice.
  Neuropsychopharmacology, 32, 1774-1782.  
17498066 I.Carmi, and E.Razin (2007).
The role played by key transcription factors in activated mast cells.
  Immunol Rev, 217, 280-291.  
16186798 H.Li, Y.Zhang, T.Su, R.M.Santella, and I.B.Weinstein (2006).
Hint1 is a haplo-insufficient tumor suppressor in mice.
  Oncogene, 25, 713-721.  
16762638 J.Martin, F.Magnino, K.Schmidt, A.C.Piguet, J.S.Lee, D.Semela, M.V.St-Pierre, A.Ziemiecki, D.Cassio, C.Brenner, S.S.Thorgeirsson, and J.F.Dufour (2006).
Hint2, a mitochondrial apoptotic sensitizer down-regulated in hepatocellular carcinoma.
  Gastroenterology, 130, 2179-2188.  
  17142912 W.T.Lo, K.H.Chin, H.L.Shr, F.P.Gao, P.C.Lyu, A.H.Wang, and S.H.Chou (2006).
Crystallization and preliminary X-ray analysis of XC1015, a histidine triad-like protein from Xanthomonas campestris.
  Acta Crystallogr Sect F Struct Biol Cryst Commun, 62, 1263-1265.  
15904496 M.Hopfe, J.H.Hegemann, and B.Henrich (2005).
HinT proteins and their putative interaction partners in Mollicutes and Chlamydiaceae.
  BMC Microbiol, 5, 27.  
12810953 T.Su, M.Suzui, L.Wang, C.S.Lin, W.Q.Xing, and I.B.Weinstein (2003).
Deletion of histidine triad nucleotide-binding protein 1/PKC-interacting protein in mice enhances cell growth and carcinogenesis.
  Proc Natl Acad Sci U S A, 100, 7824-7829.  
12119013 C.Brenner (2002).
Hint, Fhit, and GalT: function, structure, evolution, and mechanism of three branches of the histidine triad superfamily of nucleotide hydrolases and transferases.
  Biochemistry, 41, 9003-9014.  
11877379 R.Lemaire, J.Prasad, T.Kashima, J.Gustafson, J.L.Manley, and R.Lafyatis (2002).
Stability of a PKCI-1-related mRNA is controlled by the splicing factor ASF/SF2: a novel function for SR proteins.
  Genes Dev, 16, 594-607.  
11454219 A.Kitzerow, and B.Henrich (2001).
The cytosolic HinT protein of Mycoplasma hominis interacts with two membrane proteins.
  Mol Microbiol, 41, 279-287.  
11586299 H.Date, O.Onodera, H.Tanaka, K.Iwabuchi, K.Uekawa, S.Igarashi, R.Koike, T.Hiroi, T.Yuasa, Y.Awaya, T.Sakai, T.Takahashi, H.Nagatomo, Y.Sekijima, I.Kawachi, Y.Takiyama, M.Nishizawa, N.Fukuhara, K.Saito, S.Sugano, and S.Tsuji (2001).
Early-onset ataxia with ocular motor apraxia and hypoalbuminemia is caused by mutations in a new HIT superfamily gene.
  Nat Genet, 29, 184-188.  
10640598 J.L.Cereghino, and J.M.Cregg (2000).
Heterologous protein expression in the methylotrophic yeast Pichia pastoris.
  FEMS Microbiol Rev, 24, 45-66.  
  11029061 T.Hori, S.Asakawa, Y.Itoh, N.Shimizu, and S.Mizuno (2000).
Wpkci, encoding an altered form of PKCI, is conserved widely on the avian W chromosome and expressed in early female embryos: implication of its role in female sex determination.
  Mol Biol Cell, 11, 3645-3660.  
10090754 A.Abend, P.N.Garrison, L.D.Barnes, and P.A.Frey (1999).
Stereochemical retention of the configuration in the action of Fhit on phosphorus-chiral substrates.
  Biochemistry, 38, 3668-3676.  
10497298 C.Brenner, P.Bieganowski, H.C.Pace, and K.Huebner (1999).
The histidine triad superfamily of nucleotide-binding proteins.
  J Cell Physiol, 181, 179-187.  
10555761 J.Elnatan, D.Murphy, H.S.Goh, and D.R.Smith (1999).
HIT family genes: FHIT but not PKCI-1/HINT produces altered transcripts in colorectal cancer.
  Br J Cancer, 81, 874-880.  
10029548 M.C.Bewley, B.M.Tam, J.Grewal, S.He, S.Shewry, M.E.Murphy, A.B.Mason, R.C.Woodworth, E.N.Baker, and R.T.MacGillivray (1999).
X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32.
  Biochemistry, 38, 2535-2541.
PDB code: 1b3e
10389981 T.Schlott, K.Ahrens, I.Ruschenburg, S.Reimer, H.Hartmann, and M.Droese (1999).
Different gene expression of MDM2, GAGE-1, -2 and FHIT in hepatocellular carcinoma and focal nodular hyperplasia.
  Br J Cancer, 80, 73-78.  
9685474 C.C.Zhang, L.Gonzalez, and V.Phalip (1998).
Survey, analysis and genetic organization of genes encoding eukaryotic-like signaling proteins on a cyanobacterial genome.
  Nucleic Acids Res, 26, 3619-3625.  
9928473 K.Huebner, P.N.Garrison, L.D.Barnes, and C.M.Croce (1998).
The role of the FHIT/FRA3B locus in cancer.
  Annu Rev Genet, 32, 7.  
9164465 C.Brenner, P.Garrison, J.Gilmour, D.Peisach, D.Ringe, G.A.Petsko, and J.M.Lowenstein (1997).
Crystal structures of HINT demonstrate that histidine triad proteins are GalT-related nucleotide-binding proteins.
  Nat Struct Biol, 4, 231-238.
PDB codes: 3rhn 4rhn 5rhn 6rhn
9261067 C.D.Lima, K.L.D'Amico, I.Naday, G.Rosenbaum, E.M.Westbrook, and W.A.Hendrickson (1997).
MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family.
  Structure, 5, 763-774.
PDB codes: 1fit 2fit 3fit
9032077 L.Holm, and C.Sander (1997).
New structure--novel fold?
  Structure, 5, 165-171.  
8794732 L.D.Barnes, P.N.Garrison, Z.Siprashvili, A.Guranowski, A.K.Robinson, S.W.Ingram, C.M.Croce, M.Ohta, and K.Huebner (1996).
Fhit, a putative tumor suppressor in humans, is a dinucleoside 5',5"'-P1,P3-triphosphate hydrolase.
  Biochemistry, 35, 11529-11535.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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