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PDBsum entry 1fe4
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Metal transport
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PDB id
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1fe4
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Contents |
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* Residue conservation analysis
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DOI no:
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Nat Struct Biol
7:766-771
(2000)
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PubMed id:
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Structural basis for copper transfer by the metallochaperone for the Menkes/Wilson disease proteins.
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A.K.Wernimont,
D.L.Huffman,
A.L.Lamb,
T.V.O'Halloran,
A.C.Rosenzweig.
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ABSTRACT
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The Hah1 metallochaperone protein is implicated in copper delivery to the Menkes
and Wilson disease proteins. Hah1 and the N-termini of its target proteins
belong to a family of metal binding domains characterized by a conserved
MT/HCXXC sequence motif. The crystal structure of Hah1 has been determined in
the presence of Cu(I), Hg(II), and Cd(II). The 1.8 A resolution structure of
CuHah1 reveals a copper ion coordinated by Cys residues from two adjacent Hah1
molecules. The CuHah1 crystal structure is the first of a copper chaperone bound
to copper and provides structural support for direct metal ion exchange between
conserved MT/HCXXC motifs in two domains. The structures of HgHah1 and CdHah1,
determined to 1.75 A resolution, also reveal metal ion coordination by two
MT/HCXXC motifs. An extended hydrogen bonding network, unique to the complex of
two Hah1 molecules, stabilizes the metal binding sites and suggests specific
roles for several conserved residues. Taken together, the structures provide
models for intermediates in metal ion transfer and suggest a detailed molecular
mechanism for protein recognition and metal ion exchange between MT/HCXXC
containing domains.
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Selected figure(s)
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Figure 1.
Figure 1. Structure of CuHah1. Monomer A is shown in blue and
monomer B is shown in yellow. The copper ion is shown as a cyan
sphere, and the four Cys residues in the two MT/HCXXC motifs are
shown as ball-and-stick representations. a, Stereo view with the
noncrystallographic two-fold axis running vertically. b, Viewed
90° from the orientation in (a), looking down the molecular
twofold axis.
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Figure 3.
Figure 3. Hydrogen bonding interactions. a, Stereo view of
the extended hydrogen bonding network at the metal binding site
in CuHah1. Monomer A is shown in blue, monomer B is shown in
yellow, and the copper ion is shown as a cyan sphere. b, Surface
representation of Hah1 color coded according to electrostatic
potential: red, -20 kT; white 0 kT; blue, +20 kT. The upper
right inset shows the orientation of the two Hah1 molecules. c,
Surface representation of a model of Hah1 docked with the
Menkes4 domain (PDB accession code 2AW0), color coded as in (b).
The Menkes4 domain was superimposed on monomer A of Hah1 to
generate the model. In the upper right inset, the Menkes4 domain
is shown in magenta and monomer B of Hah1 is shown in yellow.
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The above figures are
reprinted
by permission from Macmillan Publishers Ltd:
Nat Struct Biol
(2000,
7,
766-771)
copyright 2000.
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Figures were
selected
by an automated process.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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A.M.Pujol,
C.Gateau,
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A series of tripodal cysteine derivatives as water-soluble chelators that are highly selective for copper(I).
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Chemistry,
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N.A.Veldhuis,
M.J.Kuiper,
R.C.Dobson,
R.B.Pearson,
and
J.Camakaris
(2011).
In silico modeling of the Menkes copper-translocating P-type ATPase 3rd metal binding domain predicts that phosphorylation regulates copper-binding.
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Biometals,
24,
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O.Y.Dmitriev
(2011).
Mechanism of tumor resistance to cisplatin mediated by the copper transporter ATP7B.
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Biochem Cell Biol,
89,
138-147.
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H.M.Alvarez,
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M.A.Canalizo-Hernández,
R.G.Marvin,
R.A.Kelly,
A.Mondragón,
J.E.Penner-Hahn,
and
T.V.O'Halloran
(2010).
Tetrathiomolybdate inhibits copper trafficking proteins through metal cluster formation.
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Science,
327,
331-334.
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PDB code:
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J.M.Moulis
(2010).
Cellular mechanisms of cadmium toxicity related to the homeostasis of essential metals.
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Biometals,
23,
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L.Banci,
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and
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Cellular copper distribution: a mechanistic systems biology approach.
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Cell Mol Life Sci,
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L.Banci,
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K.S.McGreevy,
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Molecular recognition in copper trafficking.
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Nat Prod Rep,
27,
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L.Banci,
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and
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NMR structural analysis of the soluble domain of ZiaA-ATPase and the basis of selective interactions with copper metallochaperone Atx1.
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J Biol Inorg Chem,
15,
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PDB codes:
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N.J.Robinson,
and
D.R.Winge
(2010).
Copper metallochaperones.
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Annu Rev Biochem,
79,
537-562.
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P.Chen,
N.M.Andoy,
J.J.Benítez,
A.M.Keller,
D.Panda,
and
F.Gao
(2010).
Tackling metal regulation and transport at the single-molecule level.
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Nat Prod Rep,
27,
757-767.
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T.Ansbacher,
H.K.Srivastava,
J.M.Martin,
and
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(2010).
Can DFT methods correctly and efficiently predict the coordination number of copper(I) complexes? A case study.
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J Comput Chem,
31,
75-83.
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A.K.Boal,
and
A.C.Rosenzweig
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Structural biology of copper trafficking.
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Chem Rev,
109,
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A.K.Boal,
and
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Crystal structures of cisplatin bound to a human copper chaperone.
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J Am Chem Soc,
131,
14196-14197.
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PDB codes:
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A.S.Lipton,
R.W.Heck,
W.A.de Jong,
A.R.Gao,
X.Wu,
A.Roehrich,
G.S.Harbison,
and
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Low temperature 65Cu NMR spectroscopy of the Cu+ site in azurin.
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J Am Chem Soc,
131,
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C.Singleton,
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N.E.Le Brun,
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A.M.Hemmings
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Mechanistic insights into Cu(I) cluster transfer between the chaperone CopZ and its cognate Cu(I)-transporting P-type ATPase, CopA.
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Biochem J,
424,
347-356.
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PDB code:
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I.Morin,
S.Gudin,
E.Mintz,
and
M.Cuillel
(2009).
Dissecting the role of the N-terminal metal-binding domains in activating the yeast copper ATPase in vivo.
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FEBS J,
276,
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L.Banci,
I.Bertini,
and
S.Ciofi-Baffoni
(2009).
Copper trafficking in biology: an NMR approach.
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HFSP J,
3,
165-175.
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L.Banci,
I.Bertini,
V.Calderone,
N.Della-Malva,
I.C.Felli,
S.Neri,
A.Pavelkova,
and
A.Rosato
(2009).
Copper(I)-mediated protein-protein interactions result from suboptimal interaction surfaces.
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Biochem J,
422,
37-42.
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PDB code:
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L.Braiterman,
L.Nyasae,
Y.Guo,
R.Bustos,
S.Lutsenko,
and
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Apical targeting and Golgi retention signals reside within a 9-amino acid sequence in the copper-ATPase, ATP7B.
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Am J Physiol Gastrointest Liver Physiol,
296,
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M.González-Guerrero,
D.Hong,
and
J.M.Argüello
(2009).
Chaperone-mediated Cu+ Delivery to Cu+ Transport ATPases: REQUIREMENT OF NUCLEOTIDE BINDING.
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J Biol Chem,
284,
20804-20811.
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M.Lübben,
R.Portmann,
G.Kock,
R.Stoll,
M.M.Young,
and
M.Solioz
(2009).
Structural model of the CopA copper ATPase of Enterococcus hirae based on chemical cross-linking.
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Biometals,
22,
363-375.
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P.A.Muller,
and
L.W.Klomp
(2009).
ATOX1: a novel copper-responsive transcription factor in mammals?
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Int J Biochem Cell Biol,
41,
1233-1236.
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P.Skubák,
G.Murshudov,
and
N.S.Pannu
(2009).
A multivariate likelihood SIRAS function for phasing and model refinement.
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Acta Crystallogr D Biol Crystallogr,
65,
1051-1061.
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S.Itoh,
K.Ozumi,
H.W.Kim,
O.Nakagawa,
R.D.McKinney,
R.J.Folz,
I.N.Zelko,
M.Ushio-Fukai,
and
T.Fukai
(2009).
Novel mechanism for regulation of extracellular SOD transcription and activity by copper: role of antioxidant-1.
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Free Radic Biol Med,
46,
95.
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Z.D.Liang,
D.Stockton,
N.Savaraj,
and
M.Tien Kuo
(2009).
Mechanistic comparison of human high-affinity copper transporter 1-mediated transport between copper ion and cisplatin.
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Mol Pharmacol,
76,
843-853.
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A.N.Barry,
K.M.Clark,
A.Otoikhian,
W.A.van der Donk,
and
N.J.Blackburn
(2008).
Selenocysteine positional variants reveal contributions to copper binding from cysteine residues in domains 2 and 3 of human copper chaperone for superoxide dismutase.
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Biochemistry,
47,
13074-13083.
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A.V.Davis,
and
T.V.O'Halloran
(2008).
A place for thioether chemistry in cellular copper ion recognition and trafficking.
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Nat Chem Biol,
4,
148-151.
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B.E.Kim,
T.Nevitt,
and
D.J.Thiele
(2008).
Mechanisms for copper acquisition, distribution and regulation.
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Nat Chem Biol,
4,
176-185.
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C.C.Wu,
W.J.Rice,
and
D.L.Stokes
(2008).
Structure of a copper pump suggests a regulatory role for its metal-binding domain.
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Structure,
16,
976-985.
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PDB code:
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D.Horn,
H.Al-Ali,
and
A.Barrientos
(2008).
Cmc1p is a conserved mitochondrial twin CX9C protein involved in cytochrome c oxidase biogenesis.
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Mol Cell Biol,
28,
4354-4364.
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D.Poger,
C.Fillaux,
R.Miras,
S.Crouzy,
P.Delangle,
E.Mintz,
C.Den Auwer,
and
M.Ferrand
(2008).
Interplay between glutathione, Atx1 and copper: X-ray absorption spectroscopy determination of Cu(I) environment in an Atx1 dimer.
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J Biol Inorg Chem,
13,
1239-1248.
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F.Hussain,
J.S.Olson,
and
P.Wittung-Stafshede
(2008).
Conserved residues modulate copper release in human copper chaperone Atox1.
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Proc Natl Acad Sci U S A,
105,
11158-11163.
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J.J.Benítez,
A.M.Keller,
P.Ochieng,
L.A.Yatsunyk,
D.L.Huffman,
A.C.Rosenzweig,
and
P.Chen
(2008).
Probing transient copper chaperone-Wilson disease protein interactions at the single-molecule level with nanovesicle trapping.
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J Am Chem Soc,
130,
2446-2447.
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L.Banci,
I.Bertini,
S.Ciofi-Baffoni,
A.Janicka,
M.Martinelli,
H.Kozlowski,
and
P.Palumaa
(2008).
A structural-dynamical characterization of human Cox17.
|
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J Biol Chem,
283,
7912-7920.
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PDB codes:
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M.A.Kihlken,
C.Singleton,
and
N.E.Le Brun
(2008).
Distinct characteristics of Ag+ and Cd2+ binding to CopZ from Bacillus subtilis.
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J Biol Inorg Chem,
13,
1011-1023.
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M.González-Guerrero,
and
J.M.Argüello
(2008).
Mechanism of Cu+-transporting ATPases: soluble Cu+ chaperones directly transfer Cu+ to transmembrane transport sites.
|
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Proc Natl Acad Sci U S A,
105,
5992-5997.
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R.Miras,
I.Morin,
O.Jacquin,
M.Cuillel,
F.Guillain,
and
E.Mintz
(2008).
Interplay between glutathione, Atx1 and copper. 1. Copper(I) glutathionate induced dimerization of Atx1.
|
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J Biol Inorg Chem,
13,
195-205.
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S.Itoh,
H.W.Kim,
O.Nakagawa,
K.Ozumi,
S.M.Lessner,
H.Aoki,
K.Akram,
R.D.McKinney,
M.Ushio-Fukai,
and
T.Fukai
(2008).
Novel role of antioxidant-1 (Atox1) as a copper-dependent transcription factor involved in cell proliferation.
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J Biol Chem,
283,
9157-9167.
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S.J.Park,
Y.S.Jung,
J.S.Kim,
M.D.Seo,
and
B.J.Lee
(2008).
Structural insight into the distinct properties of copper transport by the Helicobacter pylori CopP protein.
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Proteins,
71,
1007-1019.
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S.Lutsenko,
A.Gupta,
J.L.Burkhead,
and
V.Zuzel
(2008).
Cellular multitasking: the dual role of human Cu-ATPases in cofactor delivery and intracellular copper balance.
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Arch Biochem Biophys,
476,
22-32.
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S.V.Petersen,
T.Kristensen,
J.S.Petersen,
L.Ramsgaard,
T.D.Oury,
J.D.Crapo,
N.C.Nielsen,
and
J.J.Enghild
(2008).
The folding of human active and inactive extracellular superoxide dismutases is an intracellular event.
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J Biol Chem,
283,
15031-15036.
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T.Beck,
A.Krasauskas,
T.Gruene,
and
G.M.Sheldrick
(2008).
A magic triangle for experimental phasing of macromolecules.
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Acta Crystallogr D Biol Crystallogr,
64,
1179-1182.
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PDB codes:
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A.R.Mufti,
E.Burstein,
and
C.S.Duckett
(2007).
XIAP: cell death regulation meets copper homeostasis.
|
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Arch Biochem Biophys,
463,
168-174.
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B.T.Op't Holt,
and
K.M.Merz
(2007).
Insights into Cu(I) exchange in HAH1 using quantum mechanical and molecular simulations.
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Biochemistry,
46,
8816-8826.
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C.Singleton,
and
N.E.Le Brun
(2007).
Atx1-like chaperones and their cognate P-type ATPases: copper-binding and transfer.
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Biometals,
20,
275-289.
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I.R.Loftin,
S.Franke,
N.J.Blackburn,
and
M.M.McEvoy
(2007).
Unusual Cu(I)/Ag(I) coordination of Escherichia coli CusF as revealed by atomic resolution crystallography and X-ray absorption spectroscopy.
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Protein Sci,
16,
2287-2293.
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PDB code:
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J.M.Argüello,
E.Eren,
and
M.González-Guerrero
(2007).
The structure and function of heavy metal transport P1B-ATPases.
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Biometals,
20,
233-248.
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L.A.Yatsunyk,
and
A.C.Rosenzweig
(2007).
Cu(I) binding and transfer by the N terminus of the Wilson disease protein.
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J Biol Chem,
282,
8622-8631.
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M.H.Sazinsky,
B.LeMoine,
M.Orofino,
R.Davydov,
K.Z.Bencze,
T.L.Stemmler,
B.M.Hoffman,
J.M.Argüello,
and
A.C.Rosenzweig
(2007).
Characterization and structure of a Zn2+ and [2Fe-2S]-containing copper chaperone from Archaeoglobus fulgidus.
|
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J Biol Chem,
282,
25950-25959.
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PDB code:
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M.Lu,
and
D.Fu
(2007).
Structure of the zinc transporter YiiP.
|
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Science,
317,
1746-1748.
|
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PDB code:
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M.T.Kuo,
H.H.Chen,
I.S.Song,
N.Savaraj,
and
T.Ishikawa
(2007).
The roles of copper transporters in cisplatin resistance.
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Cancer Metastasis Rev,
26,
71-83.
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P.Zatta,
and
A.Frank
(2007).
Copper deficiency and neurological disorders in man and animals.
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Brain Res Rev,
54,
19-33.
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S.Lutsenko,
E.S.LeShane,
and
U.Shinde
(2007).
Biochemical basis of regulation of human copper-transporting ATPases.
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Arch Biochem Biophys,
463,
134-148.
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Y.F.Lin,
J.Yang,
and
B.P.Rosen
(2007).
ArsD residues Cys12, Cys13, and Cys18 form an As(III)-binding site required for arsenic metallochaperone activity.
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J Biol Chem,
282,
16783-16791.
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D.Achila,
L.Banci,
I.Bertini,
J.Bunce,
S.Ciofi-Baffoni,
and
D.L.Huffman
(2006).
Structure of human Wilson protein domains 5 and 6 and their interplay with domain 4 and the copper chaperone HAH1 in copper uptake.
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Proc Natl Acad Sci U S A,
103,
5729-5734.
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PDB code:
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E.Eren,
D.C.Kennedy,
M.J.Maroney,
and
J.M.Argüello
(2006).
A novel regulatory metal binding domain is present in the C terminus of Arabidopsis Zn2+-ATPase HMA2.
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J Biol Chem,
281,
33881-33891.
|
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J.F.Fuchs,
H.Nedev,
D.Poger,
M.Ferrand,
V.Brenner,
J.P.Dognon,
and
S.Crouzy
(2006).
New model potentials for sulfur-copper(I) and sulfur-mercury(II) interactions in proteins: from ab initio to molecular dynamics.
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J Comput Chem,
27,
837-856.
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J.Hong,
O.A.Kharenko,
and
M.Y.Ogawa
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
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only a partial list as not all journals are covered by
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so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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}
}
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