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PDBsum entry 1dow

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protein Protein-protein interface(s) links
Cell adhesion PDB id
1dow

 

 

 

 

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Contents
Protein chains
205 a.a. *
32 a.a. *
Waters ×252
* Residue conservation analysis
PDB id:
1dow
Name: Cell adhesion
Title: Crystal structure of a chimera of beta-catenin and alpha-catenin
Structure: Alpha-catenin. Chain: a. Fragment: dimerization and beta-catenin binding region. Engineered: yes. Beta-catenin. Chain: b. Fragment: alpha-catenin binding region. Engineered: yes
Source: Mus musculus. House mouse. Organism_taxid: 10090. Expressed in: escherichia coli. Expression_system_taxid: 562. Expression_system_taxid: 562
Biol. unit: Dimer (from PQS)
Resolution:
1.80Å     R-factor:   0.200     R-free:   0.233
Authors: S.Pokutta,W.I.Weis
Key ref:
S.Pokutta and W.I.Weis (2000). Structure of the dimerization and beta-catenin-binding region of alpha-catenin. Mol Cell, 5, 533-543. PubMed id: 10882138 DOI: 10.1016/S1097-2765(00)80447-5
Date:
21-Dec-99     Release date:   12-Jul-00    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P26231  (CTNA1_MOUSE) -  Catenin alpha-1 from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
906 a.a.
205 a.a.
Protein chain
Pfam   ArchSchema ?
Q02248  (CTNB1_MOUSE) -  Catenin beta-1 from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
781 a.a.
32 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1016/S1097-2765(00)80447-5 Mol Cell 5:533-543 (2000)
PubMed id: 10882138  
 
 
Structure of the dimerization and beta-catenin-binding region of alpha-catenin.
S.Pokutta, W.I.Weis.
 
  ABSTRACT  
 
In adherens junctions, alpha-catenin links the cadherin-beta-catenin complex to the actin-based cytoskeleton. alpha-catenin is a homodimer in solution, but forms a 1:1 heterodimer with beta-catenin. The crystal structure of the alpha-catenin dimerization domain, residues 82-279, shows that alpha-catenin dimerizes through formation of a four-helix bundle in which two antiparallel helices are contributed by each protomer. A slightly larger fragment, comprising residues 57-264, binds to beta-catenin. A chimera consisting of the alpha-catenin-binding region of beta-catenin linked to the amino terminus of alpha-catenin 57-264 behaves as a monomer in solution, as expected, since beta-catenin binding disrupts the alpha-catenin dimer. The crystal structure of this chimera reveals the interaction between alpha- and beta-catenin, and provides a basis for understanding adherens junction assembly.
 
  Selected figure(s)  
 
Figure 1.
Figure 1. Structure of α-cat 82–279(A) Topology diagram of the α-cat 82–279 fold. Helices are shown as cylinders and are numbered consecutively; residue numbers at the beginning and the end of the helices are indicated. The region colored in red represents the dimerization interface.(B) Ribbon diagram of α-cat 82–279 protomer structure. Two different views related by a 180° rotation about the horizontal axis are shown. Proline residues in helices 3 and 4 are shown in red. This figure, and Figure 1 and Figure 5, were made with MOLSCRIPT ( [26]).(C) Ribbon diagram of the α-cat 82–279 dimer.
Figure 4.
Figure 4. Interaction of α- and β-Catenin in βα-cat(A) Superdex 75 gel filtration chromatography of α-cat 57–264 and βα-cat. Peak fractions were analyzed by SDS-PAGE and Coomassie blue staining. The estimated molecular weight for the two peaks is indicated.(B) Ribbon diagram of the chimera βα-cat. The color scheme is the same as in the schematic of the model (Figure 3). Residues 82–261, corresponding to the α-cat 82–279 protomer structure, are in yellow; residues 57–81 of α-catenin are in blue; the β-catenin sequence is in red. The flexible glycine linker between β- and α-catenin, which is not visible in the structure, is shown as a dashed green line; the N and C termini of the α-catenin and the β-catenin fragment are indicated.(C) Contacts formed by tyrosine 142. View of tyrosine 142 in the βα-cat structure. The color scheme is the same as for the βα-cat structure. Amino acids interacting with tyrosine 142 are shown in ball and stick representation. Carbon, nitrogen, and oxygen atoms are shown as gray, blue, and red spheres, respectively. α and β indicate that these amino acids belong to α-catenin and β-catenin, respectively. Nonpolar van der Waals contacts are indicated by thin lines; hydrogen bonds are shown as thin, dashed lines.
 
  The above figures are reprinted by permission from Cell Press: Mol Cell (2000, 5, 533-543) copyright 2000.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
23292143 E.S.Rangarajan, and T.Izard (2013).
Dimer asymmetry defines α-catenin interactions.
  Nat Struct Mol Biol, 20, 188-193.
PDB code: 4igg
23417122 R.Desai, R.Sarpal, N.Ishiyama, M.Pellikka, M.Ikura, and U.Tepass (2013).
Monomeric α-catenin links cadherin to the actin cytoskeleton.
  Nat Cell Biol, 15, 261-273.  
21464301 A.Al-Amoudi, D.Castaño-Diez, D.P.Devos, R.B.Russell, G.T.Johnson, and A.S.Frangakis (2011).
The three-dimensional molecular structure of the desmosomal plaque.
  Proc Natl Acad Sci U S A, 108, 6480-6485.  
21322779 E.Padron, R.Komrokji, and A.F.List (2011).
Biology and treatment of the 5q- syndrome.
  Expert Rev Hematol, 4, 61-69.  
20689042 A.V.Kwiatkowski, S.L.Maiden, S.Pokutta, H.J.Choi, J.M.Benjamin, A.M.Lynch, W.J.Nelson, W.I.Weis, and J.Hardin (2010).
In vitro and in vivo reconstitution of the cadherin-catenin-actin complex from Caenorhabditis elegans.
  Proc Natl Acad Sci U S A, 107, 14591-14596.  
20404114 J.M.Benjamin, A.V.Kwiatkowski, C.Yang, F.Korobova, S.Pokutta, T.Svitkina, W.I.Weis, and W.J.Nelson (2010).
AlphaE-catenin regulates actin dynamics independently of cadherin-mediated cell-cell adhesion.
  J Cell Biol, 189, 339-352.  
19906646 J.T.Hoopes, X.Liu, X.Xu, B.Demeler, E.Folta-Stogniew, C.Li, and Y.Ha (2010).
Structural characterization of the E2 domain of APL-1, a Caenorhabditis elegans homolog of human amyloid precursor protein, and its heparin binding site.
  J Biol Chem, 285, 2165-2173.
PDB codes: 3k66 3k6b
20371349 N.Ishiyama, S.H.Lee, S.Liu, G.Y.Li, M.J.Smith, L.F.Reichardt, and M.Ikura (2010).
Dynamic and static interactions between p120 catenin and E-cadherin regulate the stability of cell-cell adhesion.
  Cell, 141, 117-128.
PDB codes: 3l6x 3l6y
20164302 P.D.McCrea, and D.Gu (2010).
The catenin family at a glance.
  J Cell Sci, 123, 637-642.  
20571587 T.J.Harris, and U.Tepass (2010).
Adherens junctions: from molecules to morphogenesis.
  Nat Rev Mol Cell Biol, 11, 502-514.  
20086044 X.Peng, L.E.Cuff, C.D.Lawton, and K.A.DeMali (2010).
Vinculin regulates cell-surface E-cadherin expression by binding to beta-catenin.
  J Cell Sci, 123, 567-577.  
19273138 A.M.Lynch, and J.Hardin (2009).
The assembly and maintenance of epithelial junctions in C. elegans.
  Front Biosci, 14, 1414-1432.  
19135061 A.T.Dawes (2009).
A mathematical model of alpha-catenin dimerization at adherens junctions in polarized epithelial cells.
  J Theor Biol, 257, 480-488.  
19759396 H.J.Choi, J.C.Gross, S.Pokutta, and W.I.Weis (2009).
Interactions of plakoglobin and beta-catenin with desmosomal cadherins: basis of selective exclusion of alpha- and beta-catenin from desmosomes.
  J Biol Chem, 284, 31776-31788.
PDB code: 3ifq
19941816 H.Ji, J.Wang, H.Nika, D.Hawke, S.Keezer, Q.Ge, B.Fang, X.Fang, D.Fang, D.W.Litchfield, K.Aldape, and Z.Lu (2009).
EGF-induced ERK activation promotes CK2-mediated disassociation of alpha-Catenin from beta-Catenin and transactivation of beta-Catenin.
  Mol Cell, 36, 547-559.  
  20066110 L.Shapiro, and W.I.Weis (2009).
Structure and biochemistry of cadherins and catenins.
  Cold Spring Harbor Perspect Biol, 1, a003053.  
  20066098 P.D.McCrea, D.Gu, and M.S.Balda (2009).
Junctional Music that the Nucleus Hears: Cell-Cell Contact Signaling and the Modulation of Gene Activity.
  Cold Spring Harbor Perspect Biol, 1, a002923.  
19458087 S.Bajpai, Y.Feng, R.Krishnamurthy, G.D.Longmore, and D.Wirtz (2009).
Loss of {alpha}-Catenin Decreases the Strength of Single E-cadherin Bonds between Human Cancer Cells.
  J Biol Chem, 284, 18252-18259.  
19365405 S.L.Lai, A.J.Chien, and R.T.Moon (2009).
Wnt/Fz signaling and the cytoskeleton: potential roles in tumorigenesis.
  Cell Res, 19, 532-545.  
19110481 S.M.Palmer, M.P.Playford, S.W.Craig, M.D.Schaller, and S.L.Campbell (2009).
Lipid Binding to the Tail Domain of Vinculin: SPECIFICITY AND THE ROLE OF THE N AND C TERMINI.
  J Biol Chem, 284, 7223-7231.  
17854762 A.Hartsock, and W.J.Nelson (2008).
Adherens and tight junctions: structure, function and connections to the actin cytoskeleton.
  Biochim Biophys Acta, 1778, 660-669.  
17945508 J.M.Benjamin, and W.J.Nelson (2008).
Bench to bedside and back again: molecular mechanisms of alpha-catenin function and roles in tumorigenesis.
  Semin Cancer Biol, 18, 53-64.  
19016843 M.Hamaguchi, D.Hamada, K.N.Suzuki, I.Sakata, and I.Yanagihara (2008).
Molecular basis of actin reorganization promoted by binding of enterohaemorrhagic Escherichia coli EspB to alpha-catenin.
  FEBS J, 275, 6260-6267.  
19017792 S.Bajpai, J.Correia, Y.Feng, J.Figueiredo, S.X.Sun, G.D.Longmore, G.Suriano, and D.Wirtz (2008).
{alpha}-Catenin mediates initial E-cadherin-dependent cell-cell recognition and subsequent bond strengthening.
  Proc Natl Acad Sci U S A, 105, 18331-18336.  
18160703 S.Heyraud, M.Jaquinod, C.Durmort, E.Dambroise, E.Concord, J.P.Schaal, P.Huber, and D.Gulino-Debrac (2008).
Contribution of annexin 2 to the architecture of mature endothelial adherens junctions.
  Mol Cell Biol, 28, 1657-1668.  
17925400 S.Choi, E.A.Gustafson-Wagner, Q.Wang, S.M.Harlan, H.W.Sinn, J.L.Lin, and J.J.Lin (2007).
Loss of mXinalpha, an intercalated disk protein, results in cardiac hypertrophy and cardiomyopathy with conduction defects.
  J Biol Chem, 282, 36024-36036.  
17077085 S.Johnson, P.Roversi, M.Espina, A.Olive, J.E.Deane, S.Birket, T.Field, W.D.Picking, A.J.Blocker, E.E.Galyov, W.L.Picking, and S.M.Lea (2007).
Self-chaperoning of the type III secretion system needle tip proteins IpaD and BipD.
  J Biol Chem, 282, 4035-4044.
PDB codes: 2cmq 2ixr 2j0n 2j0o 2j9t 2jaa
17539752 S.Pokutta, and W.I.Weis (2007).
Structure and mechanism of cadherins and catenins in cell-cell contacts.
  Annu Rev Cell Dev Biol, 23, 237-261.  
16377174 F.H.Brembeck, M.Rosário, and W.Birchmeier (2006).
Balancing cell adhesion and Wnt signaling, the key role of beta-catenin.
  Curr Opin Genet Dev, 16, 51-59.  
16855838 K.Piechotta, I.Dudanova, and M.Missler (2006).
The resilient synapse: insights from genetic interference of synaptic cell adhesion molecules.
  Cell Tissue Res, 326, 617-642.  
17172446 V.H.Bustos, A.Ferrarese, A.Venerando, O.Marin, J.E.Allende, and L.A.Pinna (2006).
The first armadillo repeat is involved in the recognition and regulation of beta-catenin phosphorylation by protein kinase CK1.
  Proc Natl Acad Sci U S A, 103, 19725-19730.  
17005550 W.I.Weis, and W.J.Nelson (2006).
Re-solving the cadherin-catenin-actin conundrum.
  J Biol Chem, 281, 35593-35597.  
16325583 F.Drees, S.Pokutta, S.Yamada, W.J.Nelson, and W.I.Weis (2005).
Alpha-catenin is a molecular switch that binds E-cadherin-beta-catenin and regulates actin-filament assembly.
  Cell, 123, 903-915.  
15795225 K.Briknarová, F.Nasertorabi, M.L.Havert, E.Eggleston, D.W.Hoyt, C.Li, A.J.Olson, K.Vuori, and K.R.Ely (2005).
The serine-rich domain from Crk-associated substrate (p130cas) is a four-helix bundle.
  J Biol Chem, 280, 21908-21914.
PDB code: 1z23
15668160 M.Bienz (2005).
beta-Catenin: a pivot between cell adhesion and Wnt signalling.
  Curr Biol, 15, R64-R67.  
15579911 M.C.Subauste, P.Nalbant, E.D.Adamson, and K.M.Hahn (2005).
Vinculin controls PTEN protein level by maintaining the interaction of the adherens junction protein beta-catenin with the scaffolding protein MAGI-2.
  J Biol Chem, 280, 5676-5681.  
15548514 S.L.Müller, M.Portwich, A.Schmidt, D.I.Utepbergenov, O.Huber, I.E.Blasig, and G.Krause (2005).
The tight junction protein occludin and the adherens junction protein alpha-catenin share a common interaction mechanism with ZO-1.
  J Biol Chem, 280, 3747-3756.  
16325582 S.Yamada, S.Pokutta, F.Drees, W.I.Weis, and W.J.Nelson (2005).
Deconstructing the cadherin-catenin-actin complex.
  Cell, 123, 889-901.  
15866026 T.J.Harris, and M.Peifer (2005).
Decisions, decisions: beta-catenin chooses between adhesion and transcription.
  Trends Cell Biol, 15, 234-237.  
15366705 A.Kobielak, and E.Fuchs (2004).
Alpha-catenin: at the junction of intercellular adhesion and actin dynamics.
  Nat Rev Mol Cell Biol, 5, 614-625.  
14647292 A.Kobielak, H.A.Pasolli, and E.Fuchs (2004).
Mammalian formin-1 participates in adherens junctions and polymerization of linear actin cables.
  Nat Cell Biol, 6, 21-30.  
15195105 C.Bakolitsa, D.M.Cohen, L.A.Bankston, A.A.Bobkov, G.W.Cadwell, L.Jennings, D.R.Critchley, S.W.Craig, and R.C.Liddington (2004).
Structural basis for vinculin activation at sites of cell adhesion.
  Nature, 430, 583-586.
PDB code: 1st6
15492040 C.J.Gottardi, and B.M.Gumbiner (2004).
Distinct molecular forms of beta-catenin are targeted to adhesive or transcriptional complexes.
  J Cell Biol, 167, 339-349.  
15371335 F.H.Brembeck, T.Schwarz-Romond, J.Bakkers, S.Wilhelm, M.Hammerschmidt, and W.Birchmeier (2004).
Essential role of BCL9-2 in the switch between beta-catenin's adhesive and transcriptional functions.
  Genes Dev, 18, 2225-2230.  
15381698 G.Solanas, S.Miravet, D.Casagolda, J.Castaño, I.Raurell, A.Corrionero, A.G.de Herreros, and M.Duñach (2004).
beta-Catenin and plakoglobin N- and C-tails determine ligand specificity.
  J Biol Chem, 279, 49849-49856.  
15070891 T.Izard, and C.Vonrhein (2004).
Structural basis for amplifying vinculin activation by talin.
  J Biol Chem, 279, 27667-27678.
PDB code: 1syq
12604612 J.K.Wahl, Y.J.Kim, J.M.Cullen, K.R.Johnson, and M.J.Wheelock (2003).
N-cadherin-catenin complexes form prior to cleavage of the proregion and transport to the plasma membrane.
  J Biol Chem, 278, 17269-17276.  
12640114 J.Piedra, S.Miravet, J.Castaño, H.G.Pálmer, N.Heisterkamp, A.García de Herreros, and M.Duñach (2003).
p120 Catenin-associated Fer and Fyn tyrosine kinases regulate beta-catenin Tyr-142 phosphorylation and beta-catenin-alpha-catenin Interaction.
  Mol Cell Biol, 23, 2287-2297.  
14570569 M.J.Wheelock, and K.R.Johnson (2003).
Cadherins as modulators of cellular phenotype.
  Annu Rev Cell Dev Biol, 19, 207-235.  
12525486 N.M.Rubenstein, Y.Guan, P.L.Woo, and G.L.Firestone (2003).
Glucocorticoid down-regulation of RhoA is required for the steroid-induced organization of the junctional complex and tight junction formation in rat mammary epithelial tumor cells.
  J Biol Chem, 278, 10353-10360.  
14517306 S.Miravet, J.Piedra, J.Castaño, I.Raurell, C.Francí, M.Duñach, and A.García de Herreros (2003).
Tyrosine phosphorylation of plakoglobin causes contrary effects on its association with desmosomes and adherens junction components and modulates beta-catenin-mediated transcription.
  Mol Cell Biol, 23, 7391-7402.  
11799401 I.Hayashi, K.Vuori, and R.C.Liddington (2002).
The focal adhesion targeting (FAT) region of focal adhesion kinase is a four-helix bundle that binds paxillin.
  Nat Struct Biol, 9, 101-106.
PDB codes: 1k40 1kky 1kl0
11907041 S.Pokutta, F.Drees, Y.Takai, W.J.Nelson, and W.I.Weis (2002).
Biochemical and structural definition of the l-afadin- and actin-binding sites of alpha-catenin.
  J Biol Chem, 277, 18868-18874.
PDB code: 1l7c
11959505 S.Pokutta, and W.I.Weis (2002).
The cytoplasmic face of cell contact sites.
  Curr Opin Struct Biol, 12, 255-262.  
11348595 A.H.Huber, and W.I.Weis (2001).
The structure of the beta-catenin/E-cadherin complex and the molecular basis of diverse ligand recognition by beta-catenin.
  Cell, 105, 391-402.
PDB codes: 1i7w 1i7x
11544029 A.Nagafuchi (2001).
Molecular architecture of adherens junctions.
  Curr Opin Cell Biol, 13, 600-603.  
11591340 C.J.Gottardi, and B.M.Gumbiner (2001).
Adhesion signaling: how beta-catenin interacts with its partners.
  Curr Biol, 11, R792-R794.  
11701326 D.L.Daniels, K.Eklof Spink, and W.I.Weis (2001).
beta-catenin: molecular plasticity and drug design.
  Trends Biochem Sci, 26, 672-678.  
11447106 J.Yang, P.Dokurno, N.K.Tonks, and D.Barford (2001).
Crystal structure of the M-fragment of alpha-catenin: implications for modulation of cell adhesion.
  EMBO J, 20, 3645-3656.
PDB code: 1h6g
10974003 K.Tachibana, H.Nakanishi, K.Mandai, K.Ozaki, W.Ikeda, Y.Yamamoto, A.Nagafuchi, S.Tsukita, and Y.Takai (2000).
Two cell adhesion molecules, nectin and cadherin, interact through their cytoplasmic domain-associated proteins.
  J Cell Biol, 150, 1161-1176.  
11136974 T.A.Graham, C.Weaver, F.Mao, D.Kimelman, and W.Xu (2000).
Crystal structure of a beta-catenin/Tcf complex.
  Cell, 103, 885-896.
PDB code: 1g3j
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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