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PDBsum entry 1azh

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Cellulase PDB id
1azh

 

 

 

 

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Contents
Protein chain
36 a.a. *
* Residue conservation analysis
PDB id:
1azh
Name: Cellulase
Title: Three-dimensional structures of three engineered cellulose-binding domains of cellobiohydrolase i from trichoderma reesei, nmr, 14 structures
Structure: Cellobiohydrolase i. Chain: a. Fragment: cellulose-binding domain. Synonym: cbd. Engineered: yes. Mutation: yes
Source: Hypocrea jecorina. Organism_taxid: 51453
NMR struc: 14 models
Authors: M.-L.Mattinen
Key ref: M.L.Mattinen et al. (1997). Three-dimensional structures of three engineered cellulose-binding domains of cellobiohydrolase I from Trichoderma reesei. Protein Sci, 6, 294-303. PubMed id: 9041630 DOI: 10.1002/pro.5560060204
Date:
18-Nov-97     Release date:   08-Apr-98    
PROCHECK
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 Headers
 References

Protein chain
P62694  (GUX1_HYPJE) -  Exoglucanase 1 from Hypocrea jecorina
Seq:
Struc:
513 a.a.
36 a.a.*
Key:    Secondary structure
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.3.2.1.91  - cellulose 1,4-beta-cellobiosidase (non-reducing end).
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains.

 

 
DOI no: 10.1002/pro.5560060204 Protein Sci 6:294-303 (1997)
PubMed id: 9041630  
 
 
Three-dimensional structures of three engineered cellulose-binding domains of cellobiohydrolase I from Trichoderma reesei.
M.L.Mattinen, M.Kontteli, J.Kerovuo, M.Linder, A.Annila, G.Lindeberg, T.Reinikainen, T.Drakenberg.
 
  ABSTRACT  
 
Three-dimensional solution structures for three engineered, synthetic CBDs (Y5A, Y31A, and Y32A) of cellobiohydrolase I (CBHI) from Trichoderma reesei were studied with nuclear magnetic resonance (NMR) and circular dichroism (CD) spectroscopy. According to CD measurements the antiparallel beta-sheet structure of the CBD fold was preserved in all engineered peptides. The three-dimensional NMR-based structures of Y31A and Y32A revealed only small local changes due to mutations in the flat face of CBD, which is expected to bind to crystalline cellulose. Therefore, the structural roles of Y31 and Y32 are minor, but their functional importance is obvious because these mutants do not bind strongly to cellulose. In the case of Y5A, the disruption of the structural framework at the N-terminus and the complete loss of binding affinity implies that Y5 has both structural and functional significance. The number of aromatic residues and their precise spatial arrangement in the flat face of the type I CBD fold appears to be critical for specific binding. A model for the CBD binding in which the three aligned aromatic rings stack onto every other glucose ring of the cellulose polymer is discussed.
 

Literature references that cite this PDB file's key reference

  PubMed id Reference
16759230 K.Igarashi, M.Wada, R.Hori, and M.Samejima (2006).
Surface density of cellobiohydrolase on crystalline celluloses. A critical parameter to evaluate enzymatic kinetics at a solid-liquid interface.
  FEBS J, 273, 2869-2878.  
16001418 C.Mulakala, and P.J.Reilly (2005).
Hypocrea jecorina (Trichoderma reesei) Cel7A as a molecular machine: A docking study.
  Proteins, 60, 598-605.  
16076392 T.Torto-Alalibo, M.Tian, K.Gajendran, M.E.Waugh, P.van West, and S.Kamoun (2005).
Expressed sequence tags from the oomycete fish pathogen Saprolegnia parasitica reveal putative virulence factors.
  BMC Microbiol, 5, 46.  
12603317 H.Boer, and A.Koivula (2003).
The relationship between thermal stability and pH optimum studied with wild-type and mutant Trichoderma reesei cellobiohydrolase Cel7A.
  Eur J Biochem, 270, 841-848.  
11025543 J.Lehtiö, T.T.Teeri, and P.A.Nygren (2000).
Alpha-amylase inhibitors selected from a combinatorial library of a cellulose binding domain scaffold.
  Proteins, 41, 316-322.  
10809681 M.Hashimoto, T.Ikegami, S.Seino, N.Ohuchi, H.Fukada, J.Sugiyama, M.Shirakawa, and T.Watanabe (2000).
Expression and characterization of the chitin-binding domain of chitinase A1 from Bacillus circulans WL-12.
  J Bacteriol, 182, 3045-3054.  
10411622 G.Carrard, and M.Linder (1999).
Widely different off rates of two closely related cellulose-binding domains from Trichoderma reesei.
  Eur J Biochem, 262, 637-643.  
  10419961 H.D.Simpson, and F.Barras (1999).
Functional analysis of the carbohydrate-binding domains of Erwinia chrysanthemi Cel5 (Endoglucanase Z) and an Escherichia coli putative chitinase.
  J Bacteriol, 181, 4611-4616.  
  10583969 H.Palonen, M.Tenkanen, and M.Linder (1999).
Dynamic interaction of Trichoderma reesei cellobiohydrolases Cel6A and Cel7A and cellulose at equilibrium and during hydrolysis.
  Appl Environ Microbiol, 65, 5229-5233.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time.

 

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