PDBsum entry 1amf

Binding protein

PDB id

1amf

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Contents

			Protein chain

					231 a.a. *

			Ligands

					MOO

			Waters ×228

* Residue conservation analysis

PDB id:

1amf

Links

Name:

Binding protein

Title:

Crystal structure of moda, a molybdate transport protein, complexed with molybdate

Structure:

Molybdate transport protein moda. Chain: a. Fragment: n-domain, c-domain. Other_details: molybdate anion is sequestered between n-and c-domains

Source:

Escherichia coli. Organism_taxid: 562. Cellular_location: periplasmic

Resolution:

1.75Å

R-factor:

0.161

R-free:

0.203

Authors:

Y.Hu,S.Rech,R.P.Gunsalus,D.C.Rees

Key ref:

Y.Hu et al. (1997). Crystal structure of the molybdate binding protein ModA. Nat Struct Biol, 4, 703-707. PubMed id: 9302996

Date:

13-Jun-97

Release date:

24-Dec-97

PROCHECK

	Headers

	References

Protein chain

P37329 (MODA_ECOLI) - Molybdate-binding protein ModA from Escherichia coli (strain K12)

Seq: Struc:					257 a.a. 231 a.a.

Key:

PfamA domain

Secondary structure

CATH domain



		Enzyme reactions

Enzyme class:

E.C.?

[IntEnz] [ExPASy] [KEGG] [BRENDA]

	Nat Struct Biol 4:703-707 (1997)
PubMed id: 9302996

Crystal structure of the molybdate binding protein ModA.
Y.Hu, S.Rech, R.P.Gunsalus, D.C.Rees.

ABSTRACT

No abstract given.

Literature references that cite this PDB file's key reference

PubMed id

Reference

20497229

T.Eitinger, D.A.Rodionov, M.Grote, and E.Schneider (2011).
Canonical and ECF-type ATP-binding cassette importers in prokaryotes: diversity in modular organization and cellular functions.

FEMS Microbiol Rev, 35, 3.

19772354

J.A.Hernandez, S.J.George, and L.M.Rubio (2009).
Molybdenum trafficking for nitrogen fixation.

Biochemistry, 48, 9711-9721.

19818021

J.P.Smart, M.J.Cliff, and D.J.Kelly (2009).
A role for tungsten in the biology of Campylobacter jejuni: tungstate stimulates formate dehydrogenase activity and is transported via an ultra-high affinity ABC system distinct from the molybdate transporter.

Mol Microbiol, 74, 742-757.

19234723

K.Hollenstein, M.Comellas-Bigler, L.E.Bevers, M.C.Feiters, W.Meyer-Klaucke, P.L.Hagedoorn, and K.P.Locher (2009).
Distorted octahedral coordination of tungstate in a subfamily of specific binding proteins.

J Biol Inorg Chem, 14, 663-672.

PDB codes:

3cfx 3cfz 3cg1 3cg3 3cij

18535149

A.L.Davidson, E.Dassa, C.Orelle, and J.Chen (2008).
Structure, function, and evolution of bacterial ATP-binding cassette systems.

Microbiol Mol Biol Rev, 72, 317.

18332142

R.Suzuki, J.Wada, T.Katayama, S.Fushinobu, T.Wakagi, H.Shoun, H.Sugimoto, A.Tanaka, H.Kumagai, H.Ashida, M.Kitaoka, and K.Yamamoto (2008).
Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.

J Biol Chem, 283, 13165-13173.

PDB codes:

2z8d 2z8e 2z8f

18485362

Y.Zhang, and V.N.Gladyshev (2008).
Molybdoproteomes and evolution of molybdenum utilization.

J Mol Biol, 379, 881-899.

17121816

N.M.Koropatkin, D.W.Koppenaal, H.B.Pakrasi, and T.J.Smith (2007).
The structure of a cyanobacterial bicarbonate transport protein, CmpA.

J Biol Chem, 282, 2606-2614.

PDB codes:

2i48 2i49 2i4b 2i4c

16952940

L.E.Bevers, P.L.Hagedoorn, G.C.Krijger, and W.R.Hagen (2006).
Tungsten transport protein A (WtpA) in Pyrococcus furiosus: the first member of a new class of tungstate and molybdate transporters.

J Bacteriol, 188, 6498-6505.

16777960

N.M.Koropatkin, H.B.Pakrasi, and T.J.Smith (2006).
Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity.

Proc Natl Acad Sci U S A, 103, 9820-9825.

PDB code:

2g29

15281134

D.B.Sherman, S.Zhang, J.B.Pitner, and A.Tropsha (2004).
Evaluation of the relative stability of liganded versus ligand-free protein conformations using Simplicial Neighborhood Analysis of Protein Packing (SNAPP) method.

Proteins, 56, 828-838.

14756792

M.Zahalak, B.Pratte, K.J.Werth, and T.Thiel (2004).
Molybdate transport and its effect on nitrogen utilization in the cyanobacterium Anabaena variabilis ATCC 29413.

Mol Microbiol, 51, 539-549.

15610013

W.A.Williams, R.G.Zhang, M.Zhou, G.Joachimiak, P.Gornicki, D.Missiakas, and A.Joachimiak (2004).
The membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus binds the dipeptide GlyMet via side chain interactions.

Biochemistry, 43, 16193-16202.

PDB code:

1p99

10737762

J.M.Johnson, and G.M.Church (2000).
Predicting ligand-binding function in families of bacterial receptors.

Proc Natl Acad Sci U S A, 97, 3965-3970.

11080635

U.G.Wagner, E.Stupperich, and C.Kratky (2000).
Structure of the molybdate/tungstate binding protein mop from Sporomusa ovata.

Structure, 8, 1127-1136.

PDB code:

1fr3

10075916

D.R.Hall, D.G.Gourley, G.A.Leonard, E.M.Duke, L.A.Anderson, D.H.Boxer, and W.N.Hunter (1999).
The high-resolution crystal structure of the molybdate-dependent transcriptional regulator (ModE) from Escherichia coli: a novel combination of domain folds.

EMBO J, 18, 1435-1446.

PDB codes:

1b9m 1b9n

9862806

D.M.Lawson, C.E.Williams, L.A.Mitchenall, and R.N.Pau (1998).
Ligand size is a major determinant of specificity in periplasmic oxyanion-binding proteins: the 1.2 A resolution crystal structure of Azotobacter vinelandii ModA.

Structure, 6, 1529-1539.

PDB code:

1atg

9545596

J.Imperial, M.Hadi, and N.K.Amy (1998).
Molybdate binding by ModA, the periplasmic component of the Escherichia coli mod molybdate transport system.

Biochim Biophys Acta, 1370, 337-346.

9862808

M.C.Lawrence, P.A.Pilling, V.C.Epa, A.M.Berry, A.D.Ogunniyi, and J.C.Paton (1998).
The crystal structure of pneumococcal surface antigen PsaA reveals a metal-binding site and a novel structure for a putative ABC-type binding protein.

Structure, 6, 1553-1561.

PDB code:

1psz

The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.