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PDBsum entry 1ab3
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Ribosomal protein
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PDB id
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1ab3
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Contents |
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* Residue conservation analysis
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Nat Struct Biol
4:20-23
(1997)
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PubMed id:
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Solution structure of the ribosomal RNA binding protein S15 from Thermus thermophilus.
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H.Berglund,
A.Rak,
A.Serganov,
M.Garber,
T.Härd.
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ABSTRACT
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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J.Jia,
A.Arif,
P.S.Ray,
and
P.L.Fox
(2008).
WHEP domains direct noncanonical function of glutamyl-Prolyl tRNA synthetase in translational control of gene expression.
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Mol Cell,
29,
679-690.
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K.S.Sandhu,
and
D.Dash
(2007).
Dynamic alpha-helices: conformations that do not conform.
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Proteins,
68,
109-122.
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L.M.Dutcă,
I.Jagannathan,
J.F.Grondek,
and
G.M.Culver
(2007).
Temperature-dependent RNP conformational rearrangements: analysis of binary complexes of primary binding proteins with 16 S rRNA.
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J Mol Biol,
368,
853-869.
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T.Créty,
and
T.E.Malliavin
(2007).
The conformational landscape of the ribosomal protein S15 and its influence on the protein interaction with 16S RNA.
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Biophys J,
92,
2647-2665.
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PDB code:
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H.M.Al-Hashimi
(2005).
Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy.
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Chembiochem,
6,
1506-1519.
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S.V.Revtovich,
A.D.Nikulin,
and
S.V.Nikonov
(2004).
Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA.
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Biochemistry (Mosc),
69,
1319-1323.
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PDB code:
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B.R.Szymczyna,
J.Bowman,
S.McCracken,
A.Pineda-Lucena,
Y.Lu,
B.Cox,
M.Lambermon,
B.R.Graveley,
C.H.Arrowsmith,
and
B.J.Blencowe
(2003).
Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.
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Genes Dev,
17,
461-475.
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PDB code:
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A.Walles-Granberg,
R.Schnell,
L.A.Isaksson,
and
M.Rydén-Aulin
(2001).
Ribosomes with large synthetic N-terminal extensions of protein S15 are active in vivo.
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Biochim Biophys Acta,
1544,
378-385.
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B.Cahuzac,
E.Berthonneau,
N.Birlirakis,
E.Guittet,
and
M.Mirande
(2000).
A recurrent RNA-binding domain is appended to eukaryotic aminoacyl-tRNA synthetases.
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EMBO J,
19,
445-452.
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PDB codes:
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D.I.Svergun,
and
K.H.Nierhaus
(2000).
A map of protein-rRNA distribution in the 70 S Escherichia coli ribosome.
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J Biol Chem,
275,
14432-14439.
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P.Allard,
A.V.Rak,
B.T.Wimberly,
W.M.Clemons,
A.Kalinin,
M.Helgstrand,
M.B.Garber,
V.Ramakrishnan,
and
T.Härd
(2000).
Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.
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Structure,
8,
875-882.
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PDB code:
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S.C.Agalarov,
G.Sridhar Prasad,
P.M.Funke,
C.D.Stout,
and
J.R.Williamson
(2000).
Structure of the S15,S6,S18-rRNA complex: assembly of the 30S ribosome central domain.
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Science,
288,
107-113.
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PDB codes:
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D.I.Svergun
(1999).
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing.
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Biophys J,
76,
2879-2886.
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N.Bui,
and
K.Strub
(1999).
New insights into signal recognition and elongation arrest activities of the signal recognition particle.
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Biol Chem,
380,
135-145.
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W.Wang,
K.Riedel,
P.Lynch,
C.Y.Chien,
G.T.Montelione,
and
R.M.Krug
(1999).
RNA binding by the novel helical domain of the influenza virus NS1 protein requires its dimer structure and a small number of specific basic amino acids.
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RNA,
5,
195-205.
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X.Chen,
D.L.Court,
and
X.Ji
(1999).
Crystal structure of ERA: a GTPase-dependent cell cycle regulator containing an RNA binding motif.
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Proc Natl Acad Sci U S A,
96,
8396-8401.
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PDB code:
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I.Tanaka,
A.Nakagawa,
H.Hosaka,
S.Wakatsuki,
F.Mueller,
and
R.Brimacombe
(1998).
Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA.
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RNA,
4,
542-550.
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J.E.McCarthy
(1998).
Posttranscriptional control of gene expression in yeast.
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Microbiol Mol Biol Rev,
62,
1492-1553.
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J.Unge,
A.berg,
S.Al-Kharadaghi,
A.Nikulin,
S.Nikonov,
N.Davydova,
N.Nevskaya,
M.Garber,
and
A.Liljas
(1998).
The crystal structure of ribosomal protein L22 from Thermus thermophilus: insights into the mechanism of erythromycin resistance.
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Structure,
6,
1577-1586.
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PDB code:
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M.Huenges,
C.Rölz,
R.Gschwind,
R.Peteranderl,
F.Berglechner,
G.Richter,
A.Bacher,
H.Kessler,
and
G.Gemmecker
(1998).
Solution structure of the antitermination protein NusB of Escherichia coli: a novel all-helical fold for an RNA-binding protein.
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EMBO J,
17,
4092-4100.
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PDB code:
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P.B.Moore
(1998).
The three-dimensional structure of the ribosome and its components.
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Annu Rev Biophys Biomol Struct,
27,
35-58.
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S.A.Woodson,
and
N.B.Leontis
(1998).
Structure and dynamics of ribosomal RNA.
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Curr Opin Struct Biol,
8,
294-300.
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S.V.Nikonov,
N.A.Nevskaya,
R.V.Fedorov,
A.R.Khairullina,
S.V.Tishchenko,
A.D.Nikulin,
and
M.B.Garber
(1998).
Structural studies of ribosomal proteins.
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Biol Chem,
379,
795-805.
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V.Ramakrishnan,
and
S.W.White
(1998).
Ribosomal protein structures: insights into the architecture, machinery and evolution of the ribosome.
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Trends Biochem Sci,
23,
208-212.
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W.M.Clemons,
C.Davies,
S.W.White,
and
V.Ramakrishnan
(1998).
Conformational variability of the N-terminal helix in the structure of ribosomal protein S15.
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Structure,
6,
429-438.
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PDB code:
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B.T.Wimberly,
S.W.White,
and
V.Ramakrishnan
(1997).
The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids.
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Structure,
5,
1187-1198.
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PDB code:
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H.Siomi,
and
G.Dreyfuss
(1997).
RNA-binding proteins as regulators of gene expression.
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Curr Opin Genet Dev,
7,
345-353.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
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Links
