 |
PDBsum entry 1qya
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Unknown function
|
PDB id
|
|
|
|
1qya
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Contents |
 |
|
|
|
|
|
|
|
|
|
|
* Residue conservation analysis
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
| |
|
DOI no:
|
Proteins
55:764-767
(2004)
|
|
PubMed id:
|
|
|
|
|
|
| |
|
Crystal structure of E. coli yddE protein reveals a striking homology with diaminopimelate epimerase.
|
|
A.Grassick,
G.Sulzenbacher,
V.Roig-Zamboni,
V.Campanacci,
C.Cambillau,
Y.Bourne.
|
|
|
|
|
| |
ABSTRACT
|
|
|
|
| |
|
|
|
|
| |
Selected figure(s)
|
|
|
|
| |
|
|
|
|
Figure 1.
Figure 1. Structure of E. coli YddE. (A) View of the dimer with
the two separate domains from each subunit shown in blue and
yellow. (B) Ribbon diagram of the molecule colored as in (A) and
viewed perpendicular to the internal approximate 2-fold axis.
The secondary structure elements are indicated. (C) Molecular
surface representation of the molecule oriented 90° from
(B). The large cleft at the domain interface is visible (center)
with Cys72 indicated in red. (D) Close view of the predicted
catalytic site with side-chains shown through a transparent
surface and colored blue for domain 1 and yellow for domain 2.
The glycerol molecule is shown in orange. (E) Ribbon diagram of
DAP epimerase (accession number 1BWZ) oriented and colored as in
(B). The regions that significantly differ from YddE are between
DAP epimerase and YddE are indicated in orange.
|
|
|
|
|
|
| |
The above figure is
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2004,
55,
764-767)
copyright 2004.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
 |
 |
|
Literature references that cite this PDB file's key reference
|
|
|
| |
PubMed id
|
|
Reference
|
|
|
|
|
|
G.S.Garvey,
C.J.Rocco,
J.C.Escalante-Semerena,
and
I.Rayment
(2007).
The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: insights into its biological function.
|
| |
Protein Sci,
16,
1274-1284.
|
|
|
PDB codes:
|
|
|
|
|
|
|
|
A.Buschiazzo,
M.Goytia,
F.Schaeffer,
W.Degrave,
W.Shepard,
C.Grégoire,
N.Chamond,
A.Cosson,
A.Berneman,
N.Coatnoan,
P.M.Alzari,
and
P.Minoprio
(2006).
Crystal structure, catalytic mechanism, and mitogenic properties of Trypanosoma cruzi proline racemase.
|
| |
Proc Natl Acad Sci U S A,
103,
1705-1710.
|
|
|
PDB codes:
|
|
|
|
|
|
|
|
P.Herde,
and
W.Blankenfeldt
(2006).
The purification, crystallization and preliminary structural characterization of human MAWDBP, a member of the phenazine biosynthesis-like protein family.
|
| |
Acta Crystallogr Sect F Struct Biol Cryst Commun,
62,
546-549.
|
|
|
|
|
|
|
D.Liger,
S.Quevillon-Cheruel,
I.Sorel,
M.Bremang,
K.Blondeau,
I.Aboulfath,
J.Janin,
H.van Tilbeurgh,
and
N.Leulliot
(2005).
Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.
|
| |
Proteins,
60,
778-786.
|
|
|
PDB code:
|
|
|
|
|
|
|
|
W.Blankenfeldt,
A.P.Kuzin,
T.Skarina,
Y.Korniyenko,
L.Tong,
P.Bayer,
P.Janning,
L.S.Thomashow,
and
D.V.Mavrodi
(2004).
Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens.
|
| |
Proc Natl Acad Sci U S A,
101,
16431-16436.
|
|
|
PDB codes:
|
|
|
|
|
|
|
The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
|
|
Links
