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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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J.M.Davidsen,
and
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Identification and characterization of NocR as a positive transcriptional regulator of the beta-lactam nocardicin A in Nocardia uniformis.
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J Bacteriol,
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R.Belas,
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Genetic determinants of Silicibacter sp. TM1040 motility.
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J Bacteriol,
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S.S.Gupta,
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Structural analysis of the DNA-binding domain of the Helicobacter pylori response regulator ArsR.
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J Biol Chem,
284,
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T.R.Mack,
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Probing the roles of the two different dimers mediated by the receiver domain of the response regulator PhoB.
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J Mol Biol,
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A.Sinha,
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PhoP-PhoP interaction at adjacent PhoP binding sites is influenced by protein phosphorylation.
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J Bacteriol,
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Characterization of chromosomal regions conserved in Yersinia pseudotuberculosis and lost by Yersinia pestis.
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G.Wisedchaisri,
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Crystal structures of the response regulator DosR from Mycobacterium tuberculosis suggest a helix rearrangement mechanism for phosphorylation activation.
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J Mol Biol,
378,
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PDB codes:
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R.Schnell,
D.Agren,
and
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(2008).
1.9 A structure of the signal receiver domain of the putative response regulator NarL from Mycobacterium tuberculosis.
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| |
Acta Crystallogr Sect F Struct Biol Cryst Commun,
64,
1096-1100.
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PDB code:
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Y.Chen,
E.Wendt-Pienkowski,
and
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(2008).
Identification and utility of FdmR1 as a Streptomyces antibiotic regulatory protein activator for fredericamycin production in Streptomyces griseus ATCC 49344 and heterologous hosts.
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J Bacteriol,
190,
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Function of lanI in regulation of landomycin A biosynthesis in Streptomyces cyanogenus S136 and cross-complementation studies with Streptomyces antibiotic regulatory proteins encoding genes.
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Arch Microbiol,
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C.H.Trinh,
Y.Liu,
S.E.Phillips,
and
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(2007).
Structure of the response regulator VicR DNA-binding domain.
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| |
Acta Crystallogr D Biol Crystallogr,
63,
266-269.
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PDB code:
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C.Hertweck,
A.Luzhetskyy,
Y.Rebets,
and
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Type II polyketide synthases: gaining a deeper insight into enzymatic teamwork.
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Nat Prod Rep,
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E.A.Hussa,
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and
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(2007).
Two-component response regulators of Vibrio fischeri: identification, mutagenesis, and characterization.
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J Bacteriol,
189,
5825-5838.
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G.Churchward
(2007).
The two faces of Janus: virulence gene regulation by CovR/S in group A streptococci.
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Mol Microbiol,
64,
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J.S.Matson,
J.H.Withey,
and
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(2007).
Regulatory networks controlling Vibrio cholerae virulence gene expression.
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Infect Immun,
75,
5542-5549.
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M.Feldman,
and
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(2007).
A pair of highly conserved two-component systems participates in the regulation of the hypervariable FIR proteins in different Legionella species.
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J Bacteriol,
189,
3382-3391.
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M.R.Duplessis,
K.G.Karol,
E.T.Adman,
L.Y.Choi,
M.A.Jacobs,
and
R.A.Cattolico
(2007).
Chloroplast His-to-Asp signal transduction: a potential mechanism for plastid gene regulation in Heterosigma akashiwo (Raphidophyceae).
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BMC Evol Biol,
7,
70.
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S.Wang,
J.Engohang-Ndong,
and
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(2007).
Structure of the DNA-binding domain of the response regulator PhoP from Mycobacterium tuberculosis.
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| |
Biochemistry,
46,
14751-14761.
|
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PDB code:
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T.Higashi,
Y.Iwasaki,
Y.Ohnishi,
and
S.Horinouchi
(2007).
A-factor and phosphate depletion signals are transmitted to the grixazone biosynthesis genes via the pathway-specific transcriptional activator GriR.
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| |
J Bacteriol,
189,
3515-3524.
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T.Zusman,
G.Aloni,
E.Halperin,
H.Kotzer,
E.Degtyar,
M.Feldman,
and
G.Segal
(2007).
The response regulator PmrA is a major regulator of the icm/dot type IV secretion system in Legionella pneumophila and Coxiella burnetii.
|
| |
Mol Microbiol,
63,
1508-1523.
|
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Y.Xiao,
L.Lan,
C.Yin,
X.Deng,
D.Baker,
J.M.Zhou,
and
X.Tang
(2007).
Two-component sensor RhpS promotes induction of Pseudomonas syringae type III secretion system by repressing negative regulator RhpR.
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| |
Mol Plant Microbe Interact,
20,
223-234.
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G.Nissan,
S.Manulis-Sasson,
D.Weinthal,
H.Mor,
G.Sessa,
and
I.Barash
(2006).
The type III effectors HsvG and HsvB of gall-forming Pantoea agglomerans determine host specificity and function as transcriptional activators.
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| |
Mol Microbiol,
61,
1118-1131.
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|
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M.K.Ashby,
and
J.Houmard
(2006).
Cyanobacterial two-component proteins: structure, diversity, distribution, and evolution.
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| |
Microbiol Mol Biol Rev,
70,
472-509.
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M.Y.Galperin
(2006).
Structural classification of bacterial response regulators: diversity of output domains and domain combinations.
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| |
J Bacteriol,
188,
4169-4182.
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T.Yoshida,
L.Qin,
L.A.Egger,
and
M.Inouye
(2006).
Transcription regulation of ompF and ompC by a single transcription factor, OmpR.
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| |
J Biol Chem,
281,
17114-17123.
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J.S.Matson,
and
V.J.DiRita
(2005).
Degradation of the membrane-localized virulence activator TcpP by the YaeL protease in Vibrio cholerae.
|
| |
Proc Natl Acad Sci U S A,
102,
16403-16408.
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M.A.Azcarate-Peril,
O.McAuliffe,
E.Altermann,
S.Lick,
W.M.Russell,
and
T.R.Klaenhammer
(2005).
Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus.
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| |
Appl Environ Microbiol,
71,
5794-5804.
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A.A.Pragman,
J.M.Yarwood,
T.J.Tripp,
and
P.M.Schlievert
(2004).
Characterization of virulence factor regulation by SrrAB, a two-component system in Staphylococcus aureus.
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| |
J Bacteriol,
186,
2430-2438.
|
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E.B.Goh,
D.F.Siino,
and
M.M.Igo
(2004).
The Escherichia coli tppB (ydgR) gene represents a new class of OmpR-regulated genes.
|
| |
J Bacteriol,
186,
4019-4024.
|
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H.Geng,
S.Nakano,
and
M.M.Nakano
(2004).
Transcriptional activation by Bacillus subtilis ResD: tandem binding to target elements and phosphorylation-dependent and -independent transcriptional activation.
|
| |
J Bacteriol,
186,
2028-2037.
|
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N.A.Beck,
E.S.Krukonis,
and
V.J.DiRita
(2004).
TcpH influences virulence gene expression in Vibrio cholerae by inhibiting degradation of the transcription activator TcpP.
|
| |
J Bacteriol,
186,
8309-8316.
|
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Y.Chen,
W.R.Abdel-Fattah,
and
F.M.Hulett
(2004).
Residues required for Bacillus subtilis PhoP DNA binding or RNA polymerase interaction: alanine scanning of PhoP effector domain transactivation loop and alpha helix 3.
|
| |
J Bacteriol,
186,
1493-1502.
|
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C.Birck,
Y.Chen,
F.M.Hulett,
and
J.P.Samama
(2003).
The crystal structure of the phosphorylation domain in PhoP reveals a functional tandem association mediated by an asymmetric interface.
|
| |
J Bacteriol,
185,
254-261.
|
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PDB code:
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D.Walthers,
V.K.Tran,
and
L.J.Kenney
(2003).
Interdomain linkers of homologous response regulators determine their mechanism of action.
|
| |
J Bacteriol,
185,
317-324.
|
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E.S.Krukonis,
and
V.J.DiRita
(2003).
DNA binding and ToxR responsiveness by the wing domain of TcpP, an activator of virulence gene expression in Vibrio cholerae.
|
| |
Mol Cell,
12,
157-165.
|
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|
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|
|
J.A.Crawford,
E.S.Krukonis,
and
V.J.DiRita
(2003).
Membrane localization of the ToxR winged-helix domain is required for TcpP-mediated virulence gene activation in Vibrio cholerae.
|
| |
Mol Microbiol,
47,
1459-1473.
|
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|
|
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|
|
M.E.Castelli,
A.Cauerhff,
M.Amongero,
F.C.Soncini,
and
E.G.Vescovi
(2003).
The H box-harboring domain is key to the function of the Salmonella enterica PhoQ Mg2+-sensor in the recognition of its partner PhoP.
|
| |
J Biol Chem,
278,
23579-23585.
|
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R.P.Novick
(2003).
Autoinduction and signal transduction in the regulation of staphylococcal virulence.
|
| |
Mol Microbiol,
48,
1429-1449.
|
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S.C.Sinha,
J.Krahn,
B.S.Shin,
D.R.Tomchick,
H.Zalkin,
and
J.L.Smith
(2003).
The purine repressor of Bacillus subtilis: a novel combination of domains adapted for transcription regulation.
|
| |
J Bacteriol,
185,
4087-4098.
|
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|
PDB codes:
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V.L.Robinson,
T.Wu,
and
A.M.Stock
(2003).
Structural analysis of the domain interface in DrrB, a response regulator of the OmpR/PhoB subfamily.
|
| |
J Bacteriol,
185,
4186-4194.
|
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|
PDB code:
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|
|
V.Molle,
L.Kremer,
C.Girard-Blanc,
G.S.Besra,
A.J.Cozzone,
and
J.F.Prost
(2003).
An FHA phosphoprotein recognition domain mediates protein EmbR phosphorylation by PknH, a Ser/Thr protein kinase from Mycobacterium tuberculosis.
|
| |
Biochemistry,
42,
15300-15309.
|
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X.Feng,
R.Oropeza,
and
L.J.Kenney
(2003).
Dual regulation by phospho-OmpR of ssrA/B gene expression in Salmonella pathogenicity island 2.
|
| |
Mol Microbiol,
48,
1131-1143.
|
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|
|
|
|
|
Y.Chen,
C.Birck,
J.P.Samama,
and
F.M.Hulett
(2003).
Residue R113 is essential for PhoP dimerization and function: a residue buried in the asymmetric PhoP dimer interface determined in the PhoPN three-dimensional crystal structure.
|
| |
J Bacteriol,
185,
262-273.
|
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|
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Y.Le Breton,
G.Boël,
A.Benachour,
H.Prévost,
Y.Auffray,
and
A.Rincé
(2003).
Molecular characterization of Enterococcus faecalis two-component signal transduction pathways related to environmental stresses.
|
| |
Environ Microbiol,
5,
329-337.
|
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Y.Rebets,
B.Ostash,
A.Luzhetskyy,
D.Hoffmeister,
A.Brana,
C.Mendez,
J.A.Salas,
A.Bechthold,
and
V.Fedorenko
(2003).
Production of landomycins in Streptomyces globisporus 1912 and S cyanogenus S136 is regulated by genes encoding putative transcriptional activators.
|
| |
FEMS Microbiol Lett,
222,
149-153.
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C.R.Rodriguez,
L.M.Schechter,
and
C.A.Lee
(2002).
Detection and characterization of the S. typhimurium HilA protein.
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BMC Microbiol,
2,
31.
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H.Zhao,
T.Msadek,
J.Zapf,
Madhusudan,
J.A.Hoch,
and
K.I.Varughese
(2002).
DNA complexed structure of the key transcription factor initiating development in sporulating bacteria.
|
| |
Structure,
10,
1041-1050.
|
|
|
PDB code:
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K.Mattison,
R.Oropeza,
and
L.J.Kenney
(2002).
The linker region plays an important role in the interdomain communication of the response regulator OmpR.
|
| |
J Biol Chem,
277,
32714-32721.
|
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K.Shindoh,
K.Maenaka,
T.Akiba,
H.Okamura,
Y.Nishimura,
K.Makino,
and
Y.Shirakihara
(2002).
Crystallization and preliminary X-ray diffraction studies on the DNA-binding domain of the transcriptional activator protein PhoB from Escherichia coli.
|
| |
Acta Crystallogr D Biol Crystallogr,
58,
1862-1864.
|
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K.Yamamoto,
H.Ogasawara,
N.Fujita,
R.Utsumi,
and
A.Ishihama
(2002).
Novel mode of transcription regulation of divergently overlapping promoters by PhoP, the regulator of two-component system sensing external magnesium availability.
|
| |
Mol Microbiol,
45,
423-438.
|
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M.J.Federle,
and
J.R.Scott
(2002).
Identification of binding sites for the group A streptococcal global regulator CovR.
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| |
Mol Microbiol,
43,
1161-1172.
|
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N.Bate,
G.Stratigopoulos,
and
E.Cundliffe
(2002).
Differential roles of two SARP-encoding regulatory genes during tylosin biosynthesis.
|
| |
Mol Microbiol,
43,
449-458.
|
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P.J.Sheldon,
S.B.Busarow,
and
C.R.Hutchinson
(2002).
Mapping the DNA-binding domain and target sequences of the Streptomyces peucetius daunorubicin biosynthesis regulatory protein, DnrI.
|
| |
Mol Microbiol,
44,
449-460.
|
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S.J.Cai,
and
M.Inouye
(2002).
EnvZ-OmpR interaction and osmoregulation in Escherichia coli.
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| |
J Biol Chem,
277,
24155-24161.
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T.Yoshida,
L.Qin,
and
M.Inouye
(2002).
Formation of the stoichiometric complex of EnvZ, a histidine kinase, with its response regulator, OmpR.
|
| |
Mol Microbiol,
46,
1273-1282.
|
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J.A.Hoch,
and
K.I.Varughese
(2001).
Keeping signals straight in phosphorelay signal transduction.
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J Bacteriol,
183,
4941-4949.
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|
L.Qin,
T.Yoshida,
and
M.Inouye
(2001).
The critical role of DNA in the equilibrium between OmpR and phosphorylated OmpR mediated by EnvZ in Escherichia coli.
|
| |
Proc Natl Acad Sci U S A,
98,
908-913.
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M.J.Barnett,
D.Y.Hung,
A.Reisenauer,
L.Shapiro,
and
S.R.Long
(2001).
A homolog of the CtrA cell cycle regulator is present and essential in Sinorhizobium meliloti.
|
| |
J Bacteriol,
183,
3204-3210.
|
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|
M.P.Allen,
K.B.Zumbrennen,
and
W.R.McCleary
(2001).
Genetic evidence that the alpha5 helix of the receiver domain of PhoB is involved in interdomain interactions.
|
| |
J Bacteriol,
183,
2204-2211.
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|
S.Seredick,
and
G.B.Spiegelman
(2001).
Lessons and questions from the structure of the Spo0A activation domain.
|
| |
Trends Microbiol,
9,
148-151.
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A.M.Stock,
V.L.Robinson,
and
P.N.Goudreau
(2000).
Two-component signal transduction.
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Annu Rev Biochem,
69,
183-215.
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D.Beier,
and
R.Frank
(2000).
Molecular characterization of two-component systems of Helicobacter pylori.
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J Bacteriol,
182,
2068-2076.
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E.S.Krukonis,
R.R.Yu,
and
V.J.Dirita
(2000).
The Vibrio cholerae ToxR/TcpP/ToxT virulence cascade: distinct roles for two membrane-localized transcriptional activators on a single promoter.
|
| |
Mol Microbiol,
38,
67-84.
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J.P.Throup,
K.K.Koretke,
A.P.Bryant,
K.A.Ingraham,
A.F.Chalker,
Y.Ge,
A.Marra,
N.G.Wallis,
J.R.Brown,
D.J.Holmes,
M.Rosenberg,
and
M.K.Burnham
(2000).
A genomic analysis of two-component signal transduction in Streptococcus pneumoniae.
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| |
Mol Microbiol,
35,
566-576.
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M.Okuda,
Y.Watanabe,
H.Okamura,
F.Hanaoka,
Y.Ohkuma,
and
Y.Nishimura
(2000).
Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
|
| |
EMBO J,
19,
1346-1356.
|
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|
PDB codes:
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|
R.J.Lewis,
S.Krzywda,
J.A.Brannigan,
J.P.Turkenburg,
K.Muchová,
E.J.Dodson,
I.Barák,
and
A.J.Wilkinson
(2000).
The trans-activation domain of the sporulation response regulator Spo0A revealed by X-ray crystallography.
|
| |
Mol Microbiol,
38,
198-212.
|
|
|
PDB code:
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|
R.Kawachi,
U.Wangchaisoonthorn,
T.Nihira,
and
Y.Yamada
(2000).
Identification by gene deletion analysis of a regulator, VmsR, that controls virginiamycin biosynthesis in Streptomyces virginiae.
|
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J Bacteriol,
182,
6259-6263.
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X.Zhang,
and
F.M.Hulett
(2000).
ResD signal transduction regulator of aerobic respiration in Bacillus subtilis: ctaA promoter regulation.
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Mol Microbiol,
37,
1208-1219.
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A.L.Perraud,
V.Weiss,
and
R.Gross
(1999).
Signalling pathways in two-component phosphorelay systems.
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Trends Microbiol,
7,
115-120.
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C.Fabret,
V.A.Feher,
and
J.A.Hoch
(1999).
Two-component signal transduction in Bacillus subtilis: how one organism sees its world.
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J Bacteriol,
181,
1975-1983.
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D.R.Hall,
D.G.Gourley,
G.A.Leonard,
E.M.Duke,
L.A.Anderson,
D.H.Boxer,
and
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PDB codes:
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PDB code:
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Where a reference describes a PDB structure, the PDB
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