data_ZNN
#
_chem_comp.id ZNN
_chem_comp.name N-(4-aminobutyl)-2-azidoacetamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H13 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-10-09
_chem_comp.pdbx_modified_date 2015-03-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 171.200
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZNN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4ME1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZNN N N N 0 1 N N N N N N 29.403 12.860 43.039 6.045 -0.290 0.280 N ZNN 1
ZNN CA CA C 0 1 N N N N N N 29.507 13.398 44.362 4.847 0.549 0.146 CA ZNN 2
ZNN CB CB C 0 1 N N N N N N 29.366 12.496 45.552 3.604 -0.341 0.089 CB ZNN 3
ZNN CG CG C 0 1 N N N N N N 28.807 13.005 46.841 2.356 0.533 -0.051 CG ZNN 4
ZNN CD CD C 0 1 N N N N N N 27.331 13.154 47.033 1.114 -0.358 -0.108 CD ZNN 5
ZNN NE NE N 0 1 N N N N N N 26.538 13.696 45.969 -0.081 0.479 -0.241 NE ZNN 6
ZNN CZ CZ C 0 1 N N N N N N 25.449 14.603 46.204 -1.300 -0.092 -0.311 CZ ZNN 7
ZNN O O O 0 1 N N N N N N 25.169 14.941 47.344 -1.407 -1.299 -0.263 O ZNN 8
ZNN CO CO C 0 1 N N N N N N 24.662 15.139 45.043 -2.529 0.769 -0.449 CO ZNN 9
ZNN N6 N6 N 0 1 N N N N N N 23.647 16.133 45.249 -3.719 -0.084 -0.503 N6 ZNN 10
ZNN N8 N8 N 1 1 N N N N N N 23.896 17.145 45.900 -4.523 0.023 0.275 N8 ZNN 11
ZNN N9 N9 N -1 1 N N N N N N 23.576 17.213 47.076 -5.328 0.131 1.053 N9 ZNN 12
ZNN H1 H1 H 0 1 N N N N N N 29.521 13.594 42.370 6.880 0.275 0.319 H1 ZNN 13
ZNN H2 H2 H 0 1 N N N N N N 30.113 12.169 42.904 5.977 -0.891 1.087 H2 ZNN 14
ZNN H4 H4 H 0 1 N N N N N N 30.498 13.869 44.436 4.775 1.219 1.002 H4 ZNN 15
ZNN H5 H5 H 0 1 N N N N N N 28.727 14.169 44.454 4.915 1.136 -0.770 H5 ZNN 16
ZNN H6 H6 H 0 1 N N N N N N 28.720 11.663 45.238 3.676 -1.011 -0.768 H6 ZNN 17
ZNN H7 H7 H 0 1 N N N N N N 30.373 12.115 45.777 3.536 -0.928 1.005 H7 ZNN 18
ZNN H8 H8 H 0 1 N N N N N N 29.157 12.319 47.627 2.284 1.203 0.806 H8 ZNN 19
ZNN H9 H9 H 0 1 N N N N N N 29.246 14.001 47.001 2.425 1.120 -0.967 H9 ZNN 20
ZNN H10 H10 H 0 1 N N N N N N 27.185 13.806 47.907 1.186 -1.028 -0.964 H10 ZNN 21
ZNN H11 H11 H 0 1 N N N N N N 26.933 12.152 47.252 1.045 -0.945 0.808 H11 ZNN 22
ZNN H12 H12 H 0 1 N N N N N N 26.751 13.433 45.028 0.005 1.445 -0.280 H12 ZNN 23
ZNN H13 H13 H 0 1 N N N N N N 24.168 14.277 44.572 -2.601 1.439 0.408 H13 ZNN 24
ZNN H14 H14 H 0 1 N N N N N N 25.390 15.572 44.342 -2.461 1.356 -1.365 H14 ZNN 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZNN N CA SING N N 1
ZNN CA CB SING N N 2
ZNN CO N6 SING N N 3
ZNN CO CZ SING N N 4
ZNN N6 N8 DOUB N N 5
ZNN CB CG SING N N 6
ZNN N8 N9 DOUB N N 7
ZNN NE CZ SING N N 8
ZNN NE CD SING N N 9
ZNN CZ O DOUB N N 10
ZNN CG CD SING N N 11
ZNN N H1 SING N N 12
ZNN N H2 SING N N 13
ZNN CA H4 SING N N 14
ZNN CA H5 SING N N 15
ZNN CB H6 SING N N 16
ZNN CB H7 SING N N 17
ZNN CG H8 SING N N 18
ZNN CG H9 SING N N 19
ZNN CD H10 SING N N 20
ZNN CD H11 SING N N 21
ZNN NE H12 SING N N 22
ZNN CO H13 SING N N 23
ZNN CO H14 SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZNN SMILES ACDLabs 12.01 "[N-]=[N+]=N\CC(=O)NCCCCN"
ZNN InChI InChI 1.03 InChI=1S/C6H13N5O/c7-3-1-2-4-9-6(12)5-10-11-8/h1-5,7H2,(H,9,12)
ZNN InChIKey InChI 1.03 SISZTIABCFMEIA-UHFFFAOYSA-N
ZNN SMILES_CANONICAL CACTVS 3.385 NCCCCNC(=O)CN=[N+]=[N-]
ZNN SMILES CACTVS 3.385 NCCCCNC(=O)CN=[N+]=[N-]
ZNN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C(CCNC(=O)CN=[N+]=[N-])CN
ZNN SMILES "OpenEye OEToolkits" 1.7.6 C(CCNC(=O)CN=[N+]=[N-])CN
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ZNN "SYSTEMATIC NAME" ACDLabs 12.01 N-(4-aminobutyl)-2-azidoacetamide
ZNN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N-(4-azanylbutyl)-2-azido-ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZNN 'Create component' 2013-10-09 PDBJ
ZNN 'Initial release' 2015-03-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZNN N N 15.990 -0.090 1
ZNN CA C 14.691 0.660 2
ZNN CB C 13.392 -0.090 3
ZNN CG C 12.093 0.660 4
ZNN CD C 10.794 -0.090 5
ZNN NE N 9.495 0.660 6
ZNN CZ C 8.196 -0.090 7
ZNN O O 8.196 -1.590 8
ZNN CO C 6.897 0.660 9
ZNN N6 N 5.598 -0.090 10
ZNN N8 N 4.299 0.660 11
ZNN N9 N 3.000 1.410 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZNN N CA SINGLE NONE 1
ZNN CA CB SINGLE NONE 2
ZNN CO N6 SINGLE NONE 3
ZNN CO CZ SINGLE NONE 4
ZNN N6 N8 DOUBLE NONE 5
ZNN CB CG SINGLE NONE 6
ZNN N8 N9 DOUBLE NONE 7
ZNN NE CZ SINGLE NONE 8
ZNN NE CD SINGLE NONE 9
ZNN CZ O DOUBLE NONE 10
ZNN CG CD SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZNN amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ZNN peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZNN NE F1 1
ZNN CZ F1 1
ZNN O F1 1
ZNN CO F1 1
ZNN O F2 1
ZNN CZ F2 1
ZNN CO F2 1
ZNN N6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZNN
_pdbe_chem_comp_rdkit_properties.exactmw 171.112
_pdbe_chem_comp_rdkit_properties.amw 171.204
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.833
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 89.188
_pdbe_chem_comp_rdkit_properties.tpsa 103.880
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.152
_pdbe_chem_comp_rdkit_properties.CrippenMR 45.311
_pdbe_chem_comp_rdkit_properties.chi0v 5.644
_pdbe_chem_comp_rdkit_properties.chi1v 2.499
_pdbe_chem_comp_rdkit_properties.chi2v 0.522
_pdbe_chem_comp_rdkit_properties.chi3v 0.522
_pdbe_chem_comp_rdkit_properties.chi4v 0.225
_pdbe_chem_comp_rdkit_properties.chi0n 18.644
_pdbe_chem_comp_rdkit_properties.chi1n 8.840
_pdbe_chem_comp_rdkit_properties.chi2n 0.522
_pdbe_chem_comp_rdkit_properties.chi3n 0.522
_pdbe_chem_comp_rdkit_properties.chi4n 0.225
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.260
_pdbe_chem_comp_rdkit_properties.kappa1 1.970
_pdbe_chem_comp_rdkit_properties.kappa2 7.843
_pdbe_chem_comp_rdkit_properties.kappa3 6.854
_pdbe_chem_comp_rdkit_properties.Phi 1.288
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZNN UniChem ZINC ZINC000263621041
ZNN UniChem PubChem 137350213
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZNN N -3.074 1.445 -1.159 ETKDGv3 1
ZNN CA -2.970 1.178 0.273 ETKDGv3 2
ZNN CB -2.264 -0.158 0.530 ETKDGv3 3
ZNN CG -0.801 -0.130 0.066 ETKDGv3 4
ZNN CD -0.104 -1.461 0.366 ETKDGv3 5
ZNN NE 1.276 -1.434 -0.115 ETKDGv3 6
ZNN CZ 2.315 -0.711 0.559 ETKDGv3 7
ZNN O 2.073 -0.098 1.634 ETKDGv3 8
ZNN CO 3.692 -0.656 -0.029 ETKDGv3 9
ZNN N6 3.704 0.197 -1.210 ETKDGv3 10
ZNN N8 3.486 1.406 -1.123 ETKDGv3 11
ZNN N9 3.267 2.613 -1.035 ETKDGv3 12
ZNN H1 -3.750 0.761 -1.571 ETKDGv3 13
ZNN H2 -3.502 2.392 -1.275 ETKDGv3 14
ZNN H4 -2.404 2.000 0.765 ETKDGv3 15
ZNN H5 -3.987 1.146 0.723 ETKDGv3 16
ZNN H6 -2.812 -0.972 0.007 ETKDGv3 17
ZNN H7 -2.297 -0.368 1.622 ETKDGv3 18
ZNN H8 -0.759 0.059 -1.029 ETKDGv3 19
ZNN H9 -0.266 0.694 0.585 ETKDGv3 20
ZNN H10 -0.117 -1.672 1.458 ETKDGv3 21
ZNN H11 -0.650 -2.283 -0.148 ETKDGv3 22
ZNN H12 1.518 -1.995 -0.963 ETKDGv3 23
ZNN H13 4.003 -1.681 -0.321 ETKDGv3 24
ZNN H14 4.422 -0.273 0.718 ETKDGv3 25
#