data_ZNH
#
_chem_comp.id ZNH
_chem_comp.name 'PROTOPORPHYRIN IX CONTAINING ZN'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C34 H32 N4 O4 Zn'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-03-01
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 626.051
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZNH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1I55
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZNH ZN ZN ZN 0 0 N N N N N N 29.326 23.341 0.257 ? ? ? ZN ZNH 1
ZNH CHA CHA C 0 1 N N N N N N 30.752 23.453 -2.839 ? ? ? CHA ZNH 2
ZNH CHB CHB C 0 1 N N N N N N 31.210 20.621 1.047 ? ? ? CHB ZNH 3
ZNH CHC CHC C 0 1 N N N N N N 28.129 23.454 3.476 ? ? ? CHC ZNH 4
ZNH CHD CHD C 0 1 N N N N N N 27.272 25.940 -0.590 ? ? ? CHD ZNH 5
ZNH NA 'N A' N 0 1 N N R N N N 30.741 22.246 -0.735 ? ? ? NA ZNH 6
ZNH C1A C1A C 0 1 N N N N N N 31.245 22.459 -1.987 ? ? ? C1A ZNH 7
ZNH C2A C2A C 0 1 N N N N N N 32.274 21.494 -2.292 ? ? ? C2A ZNH 8
ZNH C3A C3A C 0 1 N N N N N N 32.362 20.679 -1.205 ? ? ? C3A ZNH 9
ZNH C4A C4A C 0 1 N N N N N N 31.400 21.158 -0.233 ? ? ? C4A ZNH 10
ZNH CMA CMA C 0 1 N N N N N N 33.291 19.483 -1.045 ? ? ? CMA ZNH 11
ZNH CAA CAA C 0 1 N N N N N N 33.094 21.400 -3.581 ? ? ? CAA ZNH 12
ZNH CBA CBA C 0 1 N N N N N N 32.330 20.512 -4.554 ? ? ? CBA ZNH 13
ZNH CGA CGA C 0 1 N N N N N N 33.087 20.229 -5.839 ? ? ? CGA ZNH 14
ZNH O1A O1A O 0 1 N N N N N N 32.575 19.442 -6.659 ? ? ? O1A ZNH 15
ZNH O2A O2A O 0 1 N N N N N N 34.190 20.781 -6.035 ? ? ? O2A ZNH 16
ZNH NB 'N B' N 0 1 N N N N N N 29.628 22.254 1.947 ? ? ? NB ZNH 17
ZNH C1B C1B C 0 1 N N N N N N 30.381 21.109 2.053 ? ? ? C1B ZNH 18
ZNH C2B C2B C 0 1 N N N N N N 30.240 20.515 3.367 ? ? ? C2B ZNH 19
ZNH C3B C3B C 0 1 N N N N N N 29.425 21.349 4.086 ? ? ? C3B ZNH 20
ZNH C4B C4B C 0 1 N N N N N N 29.034 22.426 3.174 ? ? ? C4B ZNH 21
ZNH CMB CMB C 0 1 N N N N N N 30.816 19.160 3.775 ? ? ? CMB ZNH 22
ZNH CAB CAB C 0 1 N N N N N N 29.099 21.265 5.428 ? ? ? CAB ZNH 23
ZNH CBB CBB C 0 1 N N N N N N 30.084 21.394 6.395 ? ? ? CBB ZNH 24
ZNH NC 'N C' N 0 1 Y N N N N N 28.004 24.549 1.271 ? ? ? NC ZNH 25
ZNH C1C C1C C 0 1 Y N N N N N 27.651 24.439 2.596 ? ? ? C1C ZNH 26
ZNH C2C C2C C 0 1 Y N N N N N 26.620 25.395 2.926 ? ? ? C2C ZNH 27
ZNH C3C C3C C 0 1 Y N N N N N 26.325 26.070 1.770 ? ? ? C3C ZNH 28
ZNH C4C C4C C 0 1 Y N N N N N 27.208 25.535 0.746 ? ? ? C4C ZNH 29
ZNH CMC CMC C 0 1 N N N N N N 26.035 25.566 4.323 ? ? ? CMC ZNH 30
ZNH CAC CAC C 0 1 N N N N N N 25.344 27.048 1.555 ? ? ? CAC ZNH 31
ZNH CBC CBC C 0 1 N N N N N N 25.207 28.203 2.309 ? ? ? CBC ZNH 32
ZNH ND 'N D' N 0 1 N N N N N N 29.023 24.459 -1.447 ? ? ? ND ZNH 33
ZNH C1D C1D C 0 1 N N N N N N 28.110 25.461 -1.617 ? ? ? C1D ZNH 34
ZNH C2D C2D C 0 1 N N N N N N 28.222 26.013 -2.928 ? ? ? C2D ZNH 35
ZNH C3D C3D C 0 1 N N N N N N 29.243 25.340 -3.544 ? ? ? C3D ZNH 36
ZNH C4D C4D C 0 1 N N N N N N 29.727 24.372 -2.614 ? ? ? C4D ZNH 37
ZNH CMD CMD C 0 1 N N N N N N 27.353 27.131 -3.494 ? ? ? CMD ZNH 38
ZNH CAD CAD C 0 1 N N N N N N 29.834 25.630 -4.915 ? ? ? CAD ZNH 39
ZNH CBD CBD C 0 1 N N N N N N 30.962 26.634 -4.701 ? ? ? CBD ZNH 40
ZNH CGD CGD C 0 1 N N N N N N 31.512 27.233 -5.987 ? ? ? CGD ZNH 41
ZNH O1D O1D O 0 1 N N N N N N 31.086 26.836 -7.093 ? ? ? O1D ZNH 42
ZNH O2D O2D O 0 1 N N N N N N 32.384 28.119 -5.879 ? ? ? O2D ZNH 43
ZNH HHA HHA H 0 1 N N N N N N 31.231 23.518 -3.805 ? ? ? HHA ZNH 44
ZNH HHB HHB H 0 1 N N N N N N 31.770 19.727 1.279 ? ? ? HHB ZNH 45
ZNH HHC HHC H 0 1 N N N N N N 27.761 23.492 4.491 ? ? ? HHC ZNH 46
ZNH HHD HHD H 0 1 N N N N N N 26.587 26.726 -0.874 ? ? ? HHD ZNH 47
ZNH HMA1 HMA1 H 0 0 N N N N N N 33.132 19.024 -0.058 ? ? ? HMA1 ZNH 48
ZNH HMA2 HMA2 H 0 0 N N N N N N 33.077 18.745 -1.832 ? ? ? HMA2 ZNH 49
ZNH HMA3 HMA3 H 0 0 N N N N N N 34.336 19.816 -1.130 ? ? ? HMA3 ZNH 50
ZNH HAA1 HAA1 H 0 0 N N N N N N 33.227 22.402 -4.014 ? ? ? HAA1 ZNH 51
ZNH HAA2 HAA2 H 0 0 N N N N N N 34.079 20.960 -3.367 ? ? ? HAA2 ZNH 52
ZNH HBA1 HBA1 H 0 0 N N N N N N 32.117 19.554 -4.057 ? ? ? HBA1 ZNH 53
ZNH HBA2 HBA2 H 0 0 N N N N N N 31.383 21.010 -4.810 ? ? ? HBA2 ZNH 54
ZNH H2A H2A H 0 1 N N N N N N 34.539 20.503 -6.874 ? ? ? H2A ZNH 55
ZNH HMB1 HMB1 H 0 0 N N N N N N 30.561 18.954 4.825 ? ? ? HMB1 ZNH 56
ZNH HMB2 HMB2 H 0 0 N N N N N N 30.392 18.373 3.134 ? ? ? HMB2 ZNH 57
ZNH HMB3 HMB3 H 0 0 N N N N N N 31.910 19.177 3.660 ? ? ? HMB3 ZNH 58
ZNH HAB HAB H 0 1 N N N N N N 28.074 21.098 5.723 ? ? ? HAB ZNH 59
ZNH HBB1 HBB1 H 0 0 N N N N N N 29.825 21.328 7.441 ? ? ? HBB1 ZNH 60
ZNH HBB2 HBB2 H 0 0 N N N N N N 31.110 21.561 6.102 ? ? ? HBB2 ZNH 61
ZNH HMC1 HMC1 H 0 0 N N N N N N 26.623 26.311 4.879 ? ? ? HMC1 ZNH 62
ZNH HMC2 HMC2 H 0 0 N N N N N N 24.992 25.907 4.244 ? ? ? HMC2 ZNH 63
ZNH HMC3 HMC3 H 0 0 N N N N N N 26.067 24.603 4.854 ? ? ? HMC3 ZNH 64
ZNH HAC HAC H 0 1 N N N N N N 24.646 26.891 0.746 ? ? ? HAC ZNH 65
ZNH HBC1 HBC1 H 0 0 N N N N N N 24.423 28.909 2.078 ? ? ? HBC1 ZNH 66
ZNH HBC2 HBC2 H 0 0 N N N N N N 25.885 28.397 3.127 ? ? ? HBC2 ZNH 67
ZNH HMD1 HMD1 H 0 0 N N N N N N 27.664 27.351 -4.526 ? ? ? HMD1 ZNH 68
ZNH HMD2 HMD2 H 0 0 N N N N N N 26.299 26.815 -3.489 ? ? ? HMD2 ZNH 69
ZNH HMD3 HMD3 H 0 0 N N N N N N 27.468 28.033 -2.876 ? ? ? HMD3 ZNH 70
ZNH HAD1 HAD1 H 0 0 N N N N N N 30.229 24.705 -5.361 ? ? ? HAD1 ZNH 71
ZNH HAD2 HAD2 H 0 0 N N N N N N 29.066 26.058 -5.576 ? ? ? HAD2 ZNH 72
ZNH HBD1 HBD1 H 0 0 N N N N N N 30.581 27.453 -4.074 ? ? ? HBD1 ZNH 73
ZNH HBD2 HBD2 H 0 0 N N N N N N 31.784 26.124 -4.178 ? ? ? HBD2 ZNH 74
ZNH H2D H2D H 0 1 N N N N N N 32.645 28.414 -6.743 ? ? ? H2D ZNH 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZNH ZN NA SING N N 1
ZNH ZN NB SING N N 2
ZNH ZN NC SING N N 3
ZNH ZN ND SING N N 4
ZNH CHA C1A DOUB N N 5
ZNH CHA C4D SING N N 6
ZNH CHA HHA SING N N 7
ZNH CHB C4A DOUB N N 8
ZNH CHB C1B SING N N 9
ZNH CHB HHB SING N N 10
ZNH CHC C4B DOUB N N 11
ZNH CHC C1C SING N N 12
ZNH CHC HHC SING N N 13
ZNH CHD C4C SING N N 14
ZNH CHD C1D DOUB N N 15
ZNH CHD HHD SING N N 16
ZNH NA C1A SING N N 17
ZNH NA C4A SING N N 18
ZNH C1A C2A SING N N 19
ZNH C2A C3A DOUB N N 20
ZNH C2A CAA SING N N 21
ZNH C3A C4A SING N N 22
ZNH C3A CMA SING N N 23
ZNH CMA HMA1 SING N N 24
ZNH CMA HMA2 SING N N 25
ZNH CMA HMA3 SING N N 26
ZNH CAA CBA SING N N 27
ZNH CAA HAA1 SING N N 28
ZNH CAA HAA2 SING N N 29
ZNH CBA CGA SING N N 30
ZNH CBA HBA1 SING N N 31
ZNH CBA HBA2 SING N N 32
ZNH CGA O1A DOUB N N 33
ZNH CGA O2A SING N N 34
ZNH O2A H2A SING N N 35
ZNH NB C1B DOUB N N 36
ZNH NB C4B SING N N 37
ZNH C1B C2B SING N N 38
ZNH C2B C3B DOUB N N 39
ZNH C2B CMB SING N N 40
ZNH C3B C4B SING N N 41
ZNH C3B CAB SING N N 42
ZNH CMB HMB1 SING N N 43
ZNH CMB HMB2 SING N N 44
ZNH CMB HMB3 SING N N 45
ZNH CAB CBB DOUB N N 46
ZNH CAB HAB SING N N 47
ZNH CBB HBB1 SING N N 48
ZNH CBB HBB2 SING N N 49
ZNH NC C1C SING Y N 50
ZNH NC C4C SING Y N 51
ZNH C1C C2C DOUB Y N 52
ZNH C2C C3C SING Y N 53
ZNH C2C CMC SING N N 54
ZNH C3C C4C DOUB Y N 55
ZNH C3C CAC SING N N 56
ZNH CMC HMC1 SING N N 57
ZNH CMC HMC2 SING N N 58
ZNH CMC HMC3 SING N N 59
ZNH CAC CBC DOUB N N 60
ZNH CAC HAC SING N N 61
ZNH CBC HBC1 SING N N 62
ZNH CBC HBC2 SING N N 63
ZNH ND C1D SING N N 64
ZNH ND C4D DOUB N N 65
ZNH C1D C2D SING N N 66
ZNH C2D C3D DOUB N N 67
ZNH C2D CMD SING N N 68
ZNH C3D C4D SING N N 69
ZNH C3D CAD SING N N 70
ZNH CMD HMD1 SING N N 71
ZNH CMD HMD2 SING N N 72
ZNH CMD HMD3 SING N N 73
ZNH CAD CBD SING N N 74
ZNH CAD HAD1 SING N N 75
ZNH CAD HAD2 SING N N 76
ZNH CBD CGD SING N N 77
ZNH CBD HBD1 SING N N 78
ZNH CBD HBD2 SING N N 79
ZNH CGD O1D DOUB N N 80
ZNH CGD O2D SING N N 81
ZNH O2D H2D SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZNH InChI InChI 1.06 'InChI=1S/C34H34N4O4.Zn/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;'
ZNH InChIKey InChI 1.06 FUTVBRXUIKZACV-RGGAHWMASA-L
ZNH SMILES_CANONICAL CACTVS 3.385 'CC1=C(CCC(O)=O)C2=NC1=Cc3n4[Zn][N@@]5C(=CC6=NC(=Cc4c(C)c3C=C)C(=C6C)C=C)C(=C(CCC(O)=O)C5=C2)C'
ZNH SMILES CACTVS 3.385 'CC1=C(CCC(O)=O)C2=NC1=Cc3n4[Zn][N]5C(=CC6=NC(=Cc4c(C)c3C=C)C(=C6C)C=C)C(=C(CCC(O)=O)C5=C2)C'
ZNH SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'Cc1c2n3c(c1C=C)C=C4C(=C(C5=[N]4[Zn]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C=C)C)CCC(=O)O)C'
ZNH SMILES 'OpenEye OEToolkits' 2.0.7 'Cc1c2n3c(c1C=C)C=C4C(=C(C5=[N]4[Zn]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C=C)C)CCC(=O)O)C'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZNH 'Create component' 2001-03-01 RCSB
ZNH 'Modify descriptor' 2023-09-23 RCSB
ZNH 'Modify PCM' 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 ZNH CYS None Heme/heme-like 'Amino-acid side chain' 'Any position' CAB SG ? ?
2 ZNH CYS None Heme/heme-like 'Amino-acid side chain' 'Any position' CAC SG ? ?
#
_pdbe_chem_comp_drugbank_details.comp_id ZNH
_pdbe_chem_comp_drugbank_details.drugbank_id DB03934
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Zinc protoporphyrin'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
ZNH 'Protoporphyrin IX containing Zn' DrugBank ?
ZNH 'Zinc protoporphyrin' DrugBank ?
ZNH 'Zinc protoporphyrin-9' DrugBank ?
ZNH 'Zinc-protoporphyrin IX' DrugBank ?
ZNH ZPP DrugBank ?
#
_pdbe_chem_comp_drugbank_targets.comp_id ZNH
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03934
_pdbe_chem_comp_drugbank_targets.name 'Cytochrome c'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P99999
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZNH ZN Zn 0.000 0.000 1
ZNH CHA C -3.758 0.000 2
ZNH CHB C 0.000 3.796 3
ZNH CHC C 3.796 0.000 4
ZNH CHD C 0.000 -3.796 5
ZNH NA N -1.518 1.556 6
ZNH C1A C -2.999 1.291 7
ZNH C2A C -3.682 2.657 8
ZNH C3A C -2.619 3.720 9
ZNH C4A C -1.291 3.037 10
ZNH CMA C -2.855 5.205 11
ZNH CAA C -5.190 2.908 12
ZNH CBA C -5.717 4.312 13
ZNH CGA C -7.196 4.558 14
ZNH O1A O -8.149 3.399 15
ZNH O2A O -7.723 5.962 16
ZNH NB N 1.556 1.556 17
ZNH C1B C 1.329 3.037 18
ZNH C2B C 2.658 3.720 19
ZNH C3B C 3.758 2.657 20
ZNH C4B C 3.037 1.291 21
ZNH CMB C 2.886 5.197 22
ZNH CAB C 5.265 2.923 23
ZNH CBB C 5.779 4.333 24
ZNH NC N 1.556 -1.556 25
ZNH C1C C 3.037 -1.291 26
ZNH C2C C 3.758 -2.657 27
ZNH C3C C 2.658 -3.720 28
ZNH C4C C 1.329 -3.037 29
ZNH CMC C 5.288 -2.877 30
ZNH CAC C 2.871 -5.236 31
ZNH CBC C 1.689 -6.159 32
ZNH ND N -1.518 -1.556 33
ZNH C1D C -1.291 -3.037 34
ZNH C2D C -2.619 -3.720 35
ZNH C3D C -3.682 -2.657 36
ZNH C4D C -2.999 -1.291 37
ZNH CMD C -2.848 -5.197 38
ZNH CAD C -5.167 -2.892 39
ZNH CBD C -6.111 -1.727 40
ZNH CGD C -7.593 -1.961 41
ZNH O1D O -8.130 -3.362 42
ZNH O2D O -8.537 -0.795 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZNH ZN NA SINGLE NONE 1
ZNH NB ZN DATIVE NONE 2
ZNH ZN NC SINGLE NONE 3
ZNH ND ZN DATIVE NONE 4
ZNH CHA C1A DOUBLE NONE 5
ZNH CHA C4D SINGLE ENDDOWNRIGHT 6
ZNH CHB C4A DOUBLE NONE 7
ZNH CHB C1B SINGLE ENDDOWNRIGHT 8
ZNH CHC C4B DOUBLE NONE 9
ZNH CHC C1C SINGLE ENDDOWNRIGHT 10
ZNH CHD C4C SINGLE ENDDOWNRIGHT 11
ZNH CHD C1D DOUBLE NONE 12
ZNH NA C1A SINGLE ENDUPRIGHT 13
ZNH NA C4A SINGLE ENDUPRIGHT 14
ZNH C1A C2A SINGLE ENDUPRIGHT 15
ZNH C2A C3A DOUBLE NONE 16
ZNH C2A CAA SINGLE NONE 17
ZNH C3A C4A SINGLE ENDDOWNRIGHT 18
ZNH C3A CMA SINGLE NONE 19
ZNH CAA CBA SINGLE NONE 20
ZNH CBA CGA SINGLE NONE 21
ZNH CGA O1A DOUBLE NONE 22
ZNH CGA O2A SINGLE NONE 23
ZNH NB C1B DOUBLE NONE 24
ZNH NB C4B SINGLE ENDUPRIGHT 25
ZNH C1B C2B SINGLE NONE 26
ZNH C2B C3B DOUBLE NONE 27
ZNH C2B CMB SINGLE NONE 28
ZNH C3B C4B SINGLE ENDDOWNRIGHT 29
ZNH C3B CAB SINGLE NONE 30
ZNH CAB CBB DOUBLE NONE 31
ZNH NC C1C SINGLE NONE 32
ZNH NC C4C SINGLE NONE 33
ZNH C1C C2C DOUBLE NONE 34
ZNH C2C C3C SINGLE NONE 35
ZNH C2C CMC SINGLE NONE 36
ZNH C3C C4C DOUBLE NONE 37
ZNH C3C CAC SINGLE NONE 38
ZNH CAC CBC DOUBLE NONE 39
ZNH ND C1D SINGLE ENDUPRIGHT 40
ZNH ND C4D DOUBLE NONE 41
ZNH C1D C2D SINGLE ENDUPRIGHT 42
ZNH C2D C3D DOUBLE NONE 43
ZNH C2D CMD SINGLE NONE 44
ZNH C3D C4D SINGLE NONE 45
ZNH C3D CAD SINGLE NONE 46
ZNH CAD CBD SINGLE NONE 47
ZNH CBD CGD SINGLE NONE 48
ZNH CGD O1D DOUBLE NONE 49
ZNH CGD O2D SINGLE NONE 50
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZNH MurckoScaffold S1 scaffold 'C1=C/C2=C/c3ccc4[n]3[Zn@SP2]35<-[N]2=C1/C=c1/cc/c([n]13)=C/C1=[N]->5/C(=C\4)C=C1' 'InChI=1S/C20H12N4.Zn/c1-2-14-10-16-5-6-18(23-16)12-20-8-7-19(24-20)11-17-4-3-15(22-17)9-13(1)21-14;/h1-12H;/q-2;+2/b13-9-,14-10-,15-9?,16-10?,17-11-,18-12-,19-11?,20-12?;' AUIPNWPUEFZMSU-GPJYPRJCSA-N
ZNH porphin-like F1 fragment C1~C~C2~C~C3~C~C~C(~C~C4~C~C~C(~C~C5~C~C~C(~C~C~1~N~2)~N~5)~N~4)~N~3 ? ?
ZNH pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZNH ZN S1 1
ZNH CHA S1 1
ZNH CHB S1 1
ZNH CHC S1 1
ZNH CHD S1 1
ZNH NA S1 1
ZNH C1A S1 1
ZNH C2A S1 1
ZNH C3A S1 1
ZNH C4A S1 1
ZNH NB S1 1
ZNH C1B S1 1
ZNH C2B S1 1
ZNH C3B S1 1
ZNH C4B S1 1
ZNH NC S1 1
ZNH C1C S1 1
ZNH C2C S1 1
ZNH C3C S1 1
ZNH C4C S1 1
ZNH ND S1 1
ZNH C1D S1 1
ZNH C2D S1 1
ZNH C3D S1 1
ZNH C4D S1 1
ZNH C2A F1 1
ZNH C3A F1 1
ZNH C4A F1 1
ZNH CHB F1 1
ZNH C1B F1 1
ZNH NB F1 1
ZNH C4B F1 1
ZNH C3B F1 1
ZNH C2B F1 1
ZNH CHC F1 1
ZNH C1C F1 1
ZNH NC F1 1
ZNH C4C F1 1
ZNH CHD F1 1
ZNH C1D F1 1
ZNH ND F1 1
ZNH C4D F1 1
ZNH CHA F1 1
ZNH C1A F1 1
ZNH NA F1 1
ZNH C3D F1 1
ZNH C2D F1 1
ZNH C3C F1 1
ZNH C2C F1 1
ZNH C1A F2 1
ZNH C2A F2 1
ZNH C3A F2 1
ZNH C4A F2 1
ZNH NA F2 1
ZNH C1C F2 2
ZNH C2C F2 2
ZNH C3C F2 2
ZNH C4C F2 2
ZNH NC F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id ZNH
_pdbe_chem_comp_rdkit_properties.exactmw 624.171
_pdbe_chem_comp_rdkit_properties.amw 626.044
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 75
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.235
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 297.133
_pdbe_chem_comp_rdkit_properties.tpsa 96.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.210
_pdbe_chem_comp_rdkit_properties.CrippenMR 165.273
_pdbe_chem_comp_rdkit_properties.chi0v 24.096
_pdbe_chem_comp_rdkit_properties.chi1v 17.678
_pdbe_chem_comp_rdkit_properties.chi2v 20.956
_pdbe_chem_comp_rdkit_properties.chi3v 20.956
_pdbe_chem_comp_rdkit_properties.chi4v 21.884
_pdbe_chem_comp_rdkit_properties.chi0n 53.129
_pdbe_chem_comp_rdkit_properties.chi1n 28.187
_pdbe_chem_comp_rdkit_properties.chi2n 8.527
_pdbe_chem_comp_rdkit_properties.chi3n 8.527
_pdbe_chem_comp_rdkit_properties.chi4n 7.222
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.357
_pdbe_chem_comp_rdkit_properties.kappa1 9.083
_pdbe_chem_comp_rdkit_properties.kappa2 8.384
_pdbe_chem_comp_rdkit_properties.kappa3 2.845
_pdbe_chem_comp_rdkit_properties.Phi 1.771
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZNH UniChem DrugBank DB03934
ZNH UniChem 'KEGG LIGAND' C03184
ZNH UniChem ChEBI 28783
ZNH UniChem 'PubChem TPHARMA' 14765425
ZNH UniChem ChemicalBook CB8208833
ZNH UniChem 'Probes And Drugs' PD039198
ZNH UniChem MedChemExpress HY-101193
ZNH UniChem eMolecules 23904013
ZNH UniChem eMolecules 27678803
ZNH UniChem eMolecules 36500094
ZNH UniChem BRENDA 13304
ZNH UniChem BRENDA 141422
ZNH UniChem BRENDA 143525
ZNH UniChem BRENDA 143527
ZNH UniChem BRENDA 36310
ZNH UniChem BRENDA 46415
ZNH UniChem BRENDA 46416
ZNH UniChem BRENDA 49556
ZNH UniChem BRENDA 56839
ZNH UniChem BRENDA 59558
ZNH UniChem BRENDA 8208
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZNH ZN -1.244 2.732 0.389 ETKDGv3 1
ZNH CHA 1.839 -1.171 -1.234 ETKDGv3 2
ZNH CHB -2.477 -2.562 0.301 ETKDGv3 3
ZNH CHC -3.756 2.001 1.221 ETKDGv3 4
ZNH CHD 0.897 3.425 -0.089 ETKDGv3 5
ZNH NA -0.445 -1.379 -0.381 ETKDGv3 6
ZNH C1A 0.744 -1.895 -0.979 ETKDGv3 7
ZNH C2A 0.636 -3.344 -1.199 ETKDGv3 8
ZNH C3A -0.529 -3.744 -0.695 ETKDGv3 9
ZNH C4A -1.242 -2.553 -0.211 ETKDGv3 10
ZNH CMA -1.052 -5.155 -0.689 ETKDGv3 11
ZNH CAA 1.692 -4.230 -1.813 ETKDGv3 12
ZNH CBA 2.706 -4.672 -0.755 ETKDGv3 13
ZNH CGA 3.770 -5.521 -1.373 ETKDGv3 14
ZNH O1A 4.819 -4.989 -1.825 ETKDGv3 15
ZNH O2A 3.582 -6.895 -1.488 ETKDGv3 16
ZNH NB -2.719 -0.161 0.732 ETKDGv3 17
ZNH C1B -3.183 -1.371 0.803 ETKDGv3 18
ZNH C2B -4.515 -1.418 1.425 ETKDGv3 19
ZNH C3B -4.861 -0.174 1.726 ETKDGv3 20
ZNH C4B -3.746 0.667 1.279 ETKDGv3 21
ZNH CMB -5.341 -2.653 1.649 ETKDGv3 22
ZNH CAB -6.132 0.240 2.357 ETKDGv3 23
ZNH CBB -6.187 1.181 3.295 ETKDGv3 24
ZNH NC -1.323 2.279 0.469 ETKDGv3 25
ZNH C1C -2.623 2.807 0.732 ETKDGv3 26
ZNH C2C -2.657 4.128 0.556 ETKDGv3 27
ZNH C3C -1.299 4.547 0.208 ETKDGv3 28
ZNH C4C -0.557 3.442 0.150 ETKDGv3 29
ZNH CMC -3.861 5.014 0.702 ETKDGv3 30
ZNH CAC -0.814 5.923 -0.033 ETKDGv3 31
ZNH CBC -1.228 6.963 0.687 ETKDGv3 32
ZNH ND 1.003 1.020 -0.534 ETKDGv3 33
ZNH C1D 1.582 2.313 -0.364 ETKDGv3 34
ZNH C2D 3.012 2.250 -0.659 ETKDGv3 35
ZNH C3D 3.243 1.005 -1.058 ETKDGv3 36
ZNH C4D 1.977 0.264 -0.937 ETKDGv3 37
ZNH CMD 4.002 3.379 -0.617 ETKDGv3 38
ZNH CAD 4.571 0.434 -1.484 ETKDGv3 39
ZNH CBD 5.253 -0.271 -0.309 ETKDGv3 40
ZNH CGD 6.549 -0.876 -0.744 ETKDGv3 41
ZNH O1D 6.580 -2.059 -1.176 ETKDGv3 42
ZNH O2D 7.714 -0.116 -0.713 ETKDGv3 43
ZNH HHA 2.703 -1.672 -1.642 ETKDGv3 44
ZNH HHB -3.005 -3.502 0.357 ETKDGv3 45
ZNH HHC -4.642 2.526 1.545 ETKDGv3 46
ZNH HHD 1.428 4.366 -0.061 ETKDGv3 47
ZNH HMA1 -1.675 -5.323 -1.592 ETKDGv3 48
ZNH HMA2 -1.663 -5.338 0.218 ETKDGv3 49
ZNH HMA3 -0.225 -5.893 -0.670 ETKDGv3 50
ZNH HAA1 2.210 -3.680 -2.627 ETKDGv3 51
ZNH HAA2 1.224 -5.119 -2.288 ETKDGv3 52
ZNH HBA1 3.174 -3.783 -0.280 ETKDGv3 53
ZNH HBA2 2.191 -5.256 0.039 ETKDGv3 54
ZNH H2A 4.286 -7.481 -1.919 ETKDGv3 55
ZNH HMB1 -5.824 -2.951 0.696 ETKDGv3 56
ZNH HMB2 -6.122 -2.486 2.418 ETKDGv3 57
ZNH HMB3 -4.695 -3.481 2.007 ETKDGv3 58
ZNH HAB -7.041 -0.291 2.103 ETKDGv3 59
ZNH HBB1 -7.135 1.432 3.753 ETKDGv3 60
ZNH HBB2 -5.295 1.686 3.642 ETKDGv3 61
ZNH HMC1 -4.768 4.506 0.314 ETKDGv3 62
ZNH HMC2 -4.008 5.272 1.771 ETKDGv3 63
ZNH HMC3 -3.734 5.943 0.110 ETKDGv3 64
ZNH HAC -0.047 6.086 -0.779 ETKDGv3 65
ZNH HBC1 -1.936 6.846 1.496 ETKDGv3 66
ZNH HBC2 -0.825 7.948 0.491 ETKDGv3 67
ZNH HMD1 3.711 4.123 0.152 ETKDGv3 68
ZNH HMD2 4.042 3.874 -1.610 ETKDGv3 69
ZNH HMD3 5.012 3.007 -0.348 ETKDGv3 70
ZNH HAD1 4.412 -0.284 -2.317 ETKDGv3 71
ZNH HAD2 5.230 1.236 -1.879 ETKDGv3 72
ZNH HBD1 5.448 0.461 0.505 ETKDGv3 73
ZNH HBD2 4.591 -1.069 0.093 ETKDGv3 74
ZNH H2D 8.597 -0.506 -1.019 ETKDGv3 75
#