data_ZHO
#
_chem_comp.id ZHO
_chem_comp.name
~{N},3-dimethyl-6-[6-(4-methylpiperazin-1-yl)-1-(phenylmethyl)benzimidazol-2-yl]-[1,2,4]triazolo[4,3-a]pyrazin-8-amine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H29 N9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-06-23
_chem_comp.pdbx_modified_date 2023-07-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 467.569
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZHO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8PIQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZHO N3 N1 N 0 1 Y N N N N N 7.831 9.104 -1.993 -2.957 -0.437 -0.706 N3 ZHO 1
ZHO C4 C1 C 0 1 Y N N N N N 8.970 8.609 -1.621 -4.248 -0.693 -0.766 C4 ZHO 2
ZHO C7 C2 C 0 1 Y N N N N N 9.686 7.661 -2.415 -5.193 0.308 -0.276 C7 ZHO 3
ZHO C10 C3 C 0 1 Y N N N N N 9.935 6.335 -4.112 -5.772 2.212 0.605 C10 ZHO 4
ZHO C17 C4 C 0 1 N N N N N N -0.282 13.968 -3.547 6.541 -0.940 -0.171 C17 ZHO 5
ZHO C20 C5 C 0 1 Y N N N N N 4.096 10.342 -3.716 1.141 0.687 -0.374 C20 ZHO 6
ZHO C21 C6 C 0 1 Y N N N N N 4.400 9.758 -4.945 0.872 1.941 0.203 C21 ZHO 7
ZHO C22 C7 C 0 1 Y N N N N N 3.515 9.907 -6.012 1.934 2.788 0.539 C22 ZHO 8
ZHO C24 C8 C 0 1 Y N N N N N 2.094 11.257 -4.576 3.490 1.151 -0.263 C24 ZHO 9
ZHO C28 C9 C 0 1 Y N N N N N 4.783 9.073 -0.662 -0.347 -2.269 -0.100 C28 ZHO 10
ZHO C1 C10 C 0 1 Y N N N N N 7.949 7.850 -4.084 -3.346 1.684 0.264 C1 ZHO 11
ZHO C2 C11 C 0 1 Y N N N N N 7.325 8.724 -3.227 -2.502 0.726 -0.202 C2 ZHO 12
ZHO N5 N2 N 0 1 N N N N N N 9.470 8.895 -0.398 -4.703 -1.893 -1.287 N5 ZHO 13
ZHO N6 N3 N 0 1 Y N N N N N 9.104 7.289 -3.636 -4.697 1.487 0.233 N6 ZHO 14
ZHO N8 N4 N 0 1 Y N N N N N 10.797 6.957 -2.204 -6.505 0.375 -0.190 N8 ZHO 15
ZHO N9 N5 N 0 1 Y N N N N N 10.964 6.134 -3.280 -6.841 1.504 0.332 N9 ZHO 16
ZHO C11 C12 C 0 1 N N N N N N 9.720 5.656 -5.410 -5.748 3.586 1.223 C11 ZHO 17
ZHO C12 C13 C 0 1 N N N N N N 8.769 9.766 0.520 -3.747 -2.889 -1.776 C12 ZHO 18
ZHO N13 N6 N 0 1 Y N N N N N 5.603 9.106 -4.906 -0.475 2.052 0.309 N13 ZHO 19
ZHO C14 C14 C 0 1 N N N N N N -0.304 11.476 -4.911 5.751 1.810 -0.062 C14 ZHO 20
ZHO N15 N7 N 0 1 N N N N N N 0.964 12.098 -4.522 4.814 0.764 -0.494 N15 ZHO 21
ZHO C16 C15 C 0 1 N N N N N N 0.752 12.898 -3.299 5.112 -0.513 0.170 C16 ZHO 22
ZHO N18 N8 N 0 1 N N N N N N -1.538 13.391 -4.034 7.479 0.106 0.261 N18 ZHO 23
ZHO C19 C16 C 0 1 N N N N N N -1.305 12.552 -5.215 7.181 1.383 -0.403 C19 ZHO 24
ZHO C23 C17 C 0 1 Y N N N N N 2.412 10.698 -5.828 3.220 2.394 0.308 C23 ZHO 25
ZHO C25 C18 C 0 1 Y N N N N N 2.942 11.093 -3.514 2.453 0.298 -0.604 C25 ZHO 26
ZHO N26 N9 N 0 1 Y N N N N N 5.178 10.045 -2.906 -0.086 0.093 -0.595 N26 ZHO 27
ZHO C27 C19 C 0 1 N N N N N N 5.202 10.299 -1.442 -0.319 -1.227 -1.189 C27 ZHO 28
ZHO C29 C20 C 0 1 Y N N N N N 4.467 7.856 -1.197 0.823 -2.898 0.284 C29 ZHO 29
ZHO C30 C21 C 0 1 Y N N N N N 4.094 6.749 -0.406 0.798 -3.850 1.286 C30 ZHO 30
ZHO C31 C22 C 0 1 Y N N N N N 4.049 6.843 0.951 -0.396 -4.172 1.904 C31 ZHO 31
ZHO C32 C23 C 0 1 Y N N N N N 4.356 8.026 1.502 -1.565 -3.543 1.520 C32 ZHO 32
ZHO C33 C24 C 0 1 Y N N N N N 4.690 9.156 0.729 -1.540 -2.592 0.517 C33 ZHO 33
ZHO C34 C25 C 0 1 Y N N N N N 6.055 9.301 -3.636 -1.045 0.967 -0.155 C34 ZHO 34
ZHO C35 C26 C 0 1 N N N N N N -2.517 14.464 -4.327 8.870 -0.301 0.019 C35 ZHO 35
ZHO H49 H1 H 0 1 N N N N N N 0.104 14.672 -4.299 6.775 -1.872 0.344 H49 ZHO 36
ZHO H48 H2 H 0 1 N N N N N N -0.475 14.505 -2.606 6.630 -1.087 -1.247 H48 ZHO 37
ZHO H52 H3 H 0 1 N N N N N N 3.694 9.413 -6.956 1.736 3.753 0.982 H52 ZHO 38
ZHO H36 H4 H 0 1 N N N N N N 7.545 7.621 -5.059 -2.947 2.605 0.662 H36 ZHO 39
ZHO H37 H5 H 0 1 N N N N N N 9.582 8.020 0.073 -5.655 -2.075 -1.328 H37 ZHO 40
ZHO H40 H6 H 0 1 N N N N N N 10.543 4.950 -5.596 -5.783 4.339 0.435 H40 ZHO 41
ZHO H38 H7 H 0 1 N N N N N N 8.766 5.109 -5.384 -6.612 3.705 1.877 H38 ZHO 42
ZHO H39 H8 H 0 1 N N N N N N 9.691 6.405 -6.215 -4.833 3.708 1.802 H39 ZHO 43
ZHO H41 H9 H 0 1 N N N N N N 9.348 9.862 1.450 -4.287 -3.761 -2.145 H41 ZHO 44
ZHO H43 H10 H 0 1 N N N N N N 8.645 10.758 0.061 -3.155 -2.459 -2.584 H43 ZHO 45
ZHO H42 H11 H 0 1 N N N N N N 7.780 9.340 0.746 -3.086 -3.189 -0.962 H42 ZHO 46
ZHO H45 H12 H 0 1 N N N N N N -0.675 10.850 -4.087 5.518 2.742 -0.577 H45 ZHO 47
ZHO H44 H13 H 0 1 N N N N N N -0.150 10.853 -5.804 5.662 1.957 1.014 H44 ZHO 48
ZHO H46 H14 H 0 1 N N N N N N 0.405 12.239 -2.490 4.412 -1.274 -0.175 H46 ZHO 49
ZHO H47 H15 H 0 1 N N N N N N 1.701 13.371 -3.006 5.016 -0.393 1.249 H47 ZHO 50
ZHO H50 H17 H 0 1 N N N N N N -0.924 13.179 -6.034 7.277 1.263 -1.482 H50 ZHO 51
ZHO H51 H18 H 0 1 N N N N N N -2.254 12.087 -5.521 7.880 2.144 -0.058 H51 ZHO 52
ZHO H53 H19 H 0 1 N N N N N N 1.766 10.899 -6.670 4.036 3.051 0.569 H53 ZHO 53
ZHO H54 H20 H 0 1 N N N N N N 2.723 11.532 -2.552 2.665 -0.662 -1.050 H54 ZHO 54
ZHO H55 H21 H 0 1 N N N N N N 6.223 10.581 -1.144 0.483 -1.456 -1.891 H55 ZHO 55
ZHO H56 H22 H 0 1 N N N N N N 4.512 11.124 -1.211 -1.273 -1.225 -1.715 H56 ZHO 56
ZHO H57 H23 H 0 1 N N N N N N 4.504 7.737 -2.270 1.755 -2.646 -0.199 H57 ZHO 57
ZHO H58 H24 H 0 1 N N N N N N 3.841 5.814 -0.884 1.712 -4.342 1.586 H58 ZHO 58
ZHO H59 H25 H 0 1 N N N N N N 3.776 5.995 1.562 -0.415 -4.917 2.687 H59 ZHO 59
ZHO H60 H26 H 0 1 N N N N N N 4.347 8.116 2.578 -2.497 -3.794 2.003 H60 ZHO 60
ZHO H61 H27 H 0 1 N N N N N N 4.877 10.100 1.219 -2.453 -2.097 0.220 H61 ZHO 61
ZHO H63 H28 H 0 1 N N N N N N -2.672 15.076 -3.426 9.015 -0.483 -1.046 H63 ZHO 62
ZHO H64 H29 H 0 1 N N N N N N -2.133 15.099 -5.139 9.542 0.491 0.347 H64 ZHO 63
ZHO H62 H30 H 0 1 N N N N N N -3.473 14.014 -4.633 9.083 -1.213 0.576 H62 ZHO 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZHO C22 C23 DOUB Y N 1
ZHO C22 C21 SING Y N 2
ZHO C23 C24 SING Y N 3
ZHO C11 C10 SING N N 4
ZHO C19 C14 SING N N 5
ZHO C19 N18 SING N N 6
ZHO C21 N13 SING Y N 7
ZHO C21 C20 DOUB Y N 8
ZHO C14 N15 SING N N 9
ZHO N13 C34 DOUB Y N 10
ZHO C24 N15 SING N N 11
ZHO C24 C25 DOUB Y N 12
ZHO N15 C16 SING N N 13
ZHO C35 N18 SING N N 14
ZHO C10 N6 SING Y N 15
ZHO C10 N9 DOUB Y N 16
ZHO C1 N6 SING Y N 17
ZHO C1 C2 DOUB Y N 18
ZHO N18 C17 SING N N 19
ZHO C20 C25 SING Y N 20
ZHO C20 N26 SING Y N 21
ZHO N6 C7 SING Y N 22
ZHO C34 C2 SING N N 23
ZHO C34 N26 SING Y N 24
ZHO C17 C16 SING N N 25
ZHO N9 N8 SING Y N 26
ZHO C2 N3 SING Y N 27
ZHO N26 C27 SING N N 28
ZHO C7 N8 DOUB Y N 29
ZHO C7 C4 SING Y N 30
ZHO N3 C4 DOUB Y N 31
ZHO C4 N5 SING N N 32
ZHO C27 C28 SING N N 33
ZHO C29 C28 DOUB Y N 34
ZHO C29 C30 SING Y N 35
ZHO C28 C33 SING Y N 36
ZHO C30 C31 DOUB Y N 37
ZHO N5 C12 SING N N 38
ZHO C33 C32 DOUB Y N 39
ZHO C31 C32 SING Y N 40
ZHO C17 H49 SING N N 41
ZHO C17 H48 SING N N 42
ZHO C22 H52 SING N N 43
ZHO C1 H36 SING N N 44
ZHO N5 H37 SING N N 45
ZHO C11 H40 SING N N 46
ZHO C11 H38 SING N N 47
ZHO C11 H39 SING N N 48
ZHO C12 H41 SING N N 49
ZHO C12 H43 SING N N 50
ZHO C12 H42 SING N N 51
ZHO C14 H45 SING N N 52
ZHO C14 H44 SING N N 53
ZHO C16 H46 SING N N 54
ZHO C16 H47 SING N N 55
ZHO C19 H50 SING N N 56
ZHO C19 H51 SING N N 57
ZHO C23 H53 SING N N 58
ZHO C25 H54 SING N N 59
ZHO C27 H55 SING N N 60
ZHO C27 H56 SING N N 61
ZHO C29 H57 SING N N 62
ZHO C30 H58 SING N N 63
ZHO C31 H59 SING N N 64
ZHO C32 H60 SING N N 65
ZHO C33 H61 SING N N 66
ZHO C35 H63 SING N N 67
ZHO C35 H64 SING N N 68
ZHO C35 H62 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZHO InChI InChI 1.06 InChI=1S/C26H29N9/c1-18-30-31-26-24(27-2)28-22(17-34(18)26)25-29-21-10-9-20(33-13-11-32(3)12-14-33)15-23(21)35(25)16-19-7-5-4-6-8-19/h4-10,15,17H,11-14,16H2,1-3H3,(H,27,28)
ZHO InChIKey InChI 1.06 JLUUVUUYIXBDCG-UHFFFAOYSA-N
ZHO SMILES_CANONICAL CACTVS 3.385 CNc1nc(cn2c(C)nnc12)c3nc4ccc(cc4n3Cc5ccccc5)N6CCN(C)CC6
ZHO SMILES CACTVS 3.385 CNc1nc(cn2c(C)nnc12)c3nc4ccc(cc4n3Cc5ccccc5)N6CCN(C)CC6
ZHO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1nnc2n1cc(nc2NC)c3nc4ccc(cc4n3Cc5ccccc5)N6CCN(CC6)C
ZHO SMILES "OpenEye OEToolkits" 2.0.7 Cc1nnc2n1cc(nc2NC)c3nc4ccc(cc4n3Cc5ccccc5)N6CCN(CC6)C
#
_pdbx_chem_comp_identifier.comp_id ZHO
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N},3-dimethyl-6-[6-(4-methylpiperazin-1-yl)-1-(phenylmethyl)benzimidazol-2-yl]-[1,2,4]triazolo[4,3-a]pyrazin-8-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZHO 'Create component' 2023-06-23 PDBE
ZHO 'Initial release' 2023-07-26 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id ZHO
_pdbe_chem_comp_drugbank_details.drugbank_id DB21566
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Amredobresib
_pdbe_chem_comp_drugbank_details.description
"Amredobresib is a small molecule drug. The usage of the INN stem '-bresib' in the name indicates that Amredobresib is a inhibitor of the bromodomain and extra-terminal motif (BET) family of bromodomain (BRD) protein, antineoplastic. Amredobresib is under investigation in clinical trial NCT02516553 (BI 894999 First in Human Dose Finding Study in Advanced Malignancies). Amredobresib has a monoisotopic molecular weight of 467.25 Da."
_pdbe_chem_comp_drugbank_details.cas_number 1610044-98-8
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id ZHO
_pdbe_chem_comp_synonyms.name Amredobresib
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZHO N3 N 15.339 0.089 1
ZHO C4 C 16.839 0.089 2
ZHO C7 C 17.589 -1.210 3
ZHO C10 C 17.840 -3.614 4
ZHO C17 C 5.598 2.540 5
ZHO C20 C 10.794 -0.460 6
ZHO C21 C 10.794 -1.960 7
ZHO C22 C 9.495 -2.710 8
ZHO C24 C 8.196 -0.460 9
ZHO C28 C 11.678 2.540 10
ZHO C1 C 15.339 -2.509 11
ZHO C2 C 14.589 -1.210 12
ZHO N5 N 17.589 1.388 13
ZHO N6 N 16.839 -2.509 14
ZHO N8 N 19.047 -1.523 15
ZHO N9 N 19.201 -3.006 16
ZHO C11 C 17.530 -5.082 17
ZHO C12 C 19.089 1.388 18
ZHO N13 N 12.214 -2.417 19
ZHO C14 C 5.598 -0.460 20
ZHO N15 N 6.897 0.290 21
ZHO C16 C 6.897 1.790 22
ZHO N18 N 4.299 1.790 23
ZHO C19 C 4.299 0.290 24
ZHO C23 C 8.196 -1.960 25
ZHO C25 C 9.495 0.290 26
ZHO N26 N 12.214 -0.003 27
ZHO C27 C 12.680 1.423 28
ZHO C29 C 12.144 3.966 29
ZHO C30 C 11.142 5.082 30
ZHO C31 C 9.674 4.773 31
ZHO C32 C 9.208 3.347 32
ZHO C33 C 10.210 2.230 33
ZHO C34 C 13.089 -1.210 34
ZHO C35 C 3.000 2.540 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZHO C22 C23 DOUBLE NONE 1
ZHO C22 C21 SINGLE NONE 2
ZHO C23 C24 SINGLE NONE 3
ZHO C11 C10 SINGLE NONE 4
ZHO C19 C14 SINGLE NONE 5
ZHO C19 N18 SINGLE NONE 6
ZHO C21 N13 SINGLE NONE 7
ZHO C21 C20 DOUBLE NONE 8
ZHO C14 N15 SINGLE NONE 9
ZHO N13 C34 DOUBLE NONE 10
ZHO C24 N15 SINGLE NONE 11
ZHO C24 C25 DOUBLE NONE 12
ZHO N15 C16 SINGLE NONE 13
ZHO C35 N18 SINGLE NONE 14
ZHO C10 N6 SINGLE NONE 15
ZHO C10 N9 DOUBLE NONE 16
ZHO C1 N6 SINGLE NONE 17
ZHO C1 C2 DOUBLE NONE 18
ZHO N18 C17 SINGLE NONE 19
ZHO C20 C25 SINGLE NONE 20
ZHO C20 N26 SINGLE NONE 21
ZHO N6 C7 SINGLE NONE 22
ZHO C34 C2 SINGLE NONE 23
ZHO C34 N26 SINGLE NONE 24
ZHO C17 C16 SINGLE NONE 25
ZHO N9 N8 SINGLE NONE 26
ZHO C2 N3 SINGLE NONE 27
ZHO N26 C27 SINGLE NONE 28
ZHO C7 N8 DOUBLE NONE 29
ZHO C7 C4 SINGLE NONE 30
ZHO N3 C4 DOUBLE NONE 31
ZHO C4 N5 SINGLE NONE 32
ZHO C27 C28 SINGLE NONE 33
ZHO C29 C28 DOUBLE NONE 34
ZHO C29 C30 SINGLE NONE 35
ZHO C28 C33 SINGLE NONE 36
ZHO C30 C31 DOUBLE NONE 37
ZHO N5 C12 SINGLE NONE 38
ZHO C33 C32 DOUBLE NONE 39
ZHO C31 C32 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZHO MurckoScaffold S1 scaffold c1ccc(Cn2c(-c3cn4cnnc4cn3)nc3ccc(N4CCNCC4)cc32)cc1 InChI=1S/C23H22N8/c1-2-4-17(5-3-1)14-31-21-12-18(29-10-8-24-9-11-29)6-7-19(21)27-23(31)20-15-30-16-26-28-22(30)13-25-20/h1-7,12-13,15-16,24H,8-11,14H2 AINKXHWVRMXSPM-UHFFFAOYSA-N
ZHO benzimidazole F1 fragment 'c1ccc2[nH]cnc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)8-5-9-7/h1-5H,(H,8,9) HYZJCKYKOHLVJF-UHFFFAOYSA-N
ZHO imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
ZHO phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
ZHO piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
ZHO pyrazine F5 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZHO N3 S1 1
ZHO C4 S1 1
ZHO C7 S1 1
ZHO C10 S1 1
ZHO C17 S1 1
ZHO C20 S1 1
ZHO C21 S1 1
ZHO C22 S1 1
ZHO C24 S1 1
ZHO C28 S1 1
ZHO C1 S1 1
ZHO C2 S1 1
ZHO N6 S1 1
ZHO N8 S1 1
ZHO N9 S1 1
ZHO N13 S1 1
ZHO C14 S1 1
ZHO N15 S1 1
ZHO C16 S1 1
ZHO N18 S1 1
ZHO C19 S1 1
ZHO C23 S1 1
ZHO C25 S1 1
ZHO N26 S1 1
ZHO C27 S1 1
ZHO C29 S1 1
ZHO C30 S1 1
ZHO C31 S1 1
ZHO C32 S1 1
ZHO C33 S1 1
ZHO C34 S1 1
ZHO C20 F1 1
ZHO N26 F1 1
ZHO C34 F1 1
ZHO N13 F1 1
ZHO C21 F1 1
ZHO C22 F1 1
ZHO C23 F1 1
ZHO C24 F1 1
ZHO C25 F1 1
ZHO C20 F2 1
ZHO C21 F2 1
ZHO N13 F2 1
ZHO C34 F2 1
ZHO N26 F2 1
ZHO C20 F3 1
ZHO C21 F3 1
ZHO C22 F3 1
ZHO C23 F3 1
ZHO C24 F3 1
ZHO C25 F3 1
ZHO C28 F3 2
ZHO C29 F3 2
ZHO C30 F3 2
ZHO C31 F3 2
ZHO C32 F3 2
ZHO C33 F3 2
ZHO N15 F4 1
ZHO C14 F4 1
ZHO C19 F4 1
ZHO N18 F4 1
ZHO C17 F4 1
ZHO C16 F4 1
ZHO C4 F5 1
ZHO C7 F5 1
ZHO N6 F5 1
ZHO C1 F5 1
ZHO C2 F5 1
ZHO N3 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ZHO
_pdbe_chem_comp_rdkit_properties.exactmw 467.255
_pdbe_chem_comp_rdkit_properties.amw 467.581
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.308
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 244.397
_pdbe_chem_comp_rdkit_properties.tpsa 79.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.398
_pdbe_chem_comp_rdkit_properties.CrippenMR 132.236
_pdbe_chem_comp_rdkit_properties.chi0v 17.025
_pdbe_chem_comp_rdkit_properties.chi1v 9.422
_pdbe_chem_comp_rdkit_properties.chi2v 4.524
_pdbe_chem_comp_rdkit_properties.chi3v 4.524
_pdbe_chem_comp_rdkit_properties.chi4v 3.047
_pdbe_chem_comp_rdkit_properties.chi0n 46.025
_pdbe_chem_comp_rdkit_properties.chi1n 23.869
_pdbe_chem_comp_rdkit_properties.chi2n 4.524
_pdbe_chem_comp_rdkit_properties.chi3n 4.524
_pdbe_chem_comp_rdkit_properties.chi4n 3.047
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.980
_pdbe_chem_comp_rdkit_properties.kappa1 6.613
_pdbe_chem_comp_rdkit_properties.kappa2 8.664
_pdbe_chem_comp_rdkit_properties.kappa3 3.872
_pdbe_chem_comp_rdkit_properties.Phi 1.637
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ZHO UniChem DrugBank DB21566
ZHO UniChem 'Probes And Drugs' PD164404
ZHO UniChem SureChEMBL SCHEMBL15722521
ZHO UniChem PubChem 76072013
ZHO UniChem BindingDb 209472
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZHO N3 -4.029 -0.423 1.268 ETKDGv3 1
ZHO C4 -5.329 -0.271 1.293 ETKDGv3 2
ZHO C7 -5.867 1.023 0.874 ETKDGv3 3
ZHO C10 -5.828 3.133 0.318 ETKDGv3 4
ZHO C17 6.408 -1.303 0.623 ETKDGv3 5
ZHO C20 0.511 0.294 0.512 ETKDGv3 6
ZHO C21 0.239 -0.414 1.581 ETKDGv3 7
ZHO C22 1.283 -1.156 2.301 ETKDGv3 8
ZHO C24 2.866 -0.302 0.602 ETKDGv3 9
ZHO C28 -1.216 -0.214 -2.154 ETKDGv3 10
ZHO C1 -3.569 1.825 0.462 ETKDGv3 11
ZHO C2 -3.104 0.619 0.852 ETKDGv3 12
ZHO N5 -6.189 -1.329 1.735 ETKDGv3 13
ZHO N6 -4.983 1.999 0.393 ETKDGv3 14
ZHO N8 -7.061 1.481 1.055 ETKDGv3 15
ZHO N9 -7.035 2.840 0.690 ETKDGv3 16
ZHO C11 -5.377 4.509 -0.041 ETKDGv3 17
ZHO C12 -5.666 -2.623 2.157 ETKDGv3 18
ZHO N13 -1.152 -0.396 1.859 ETKDGv3 19
ZHO C14 4.806 1.018 -0.334 ETKDGv3 20
ZHO N15 4.220 -0.255 0.110 ETKDGv3 21
ZHO C16 5.015 -1.482 -0.015 ETKDGv3 22
ZHO N18 6.804 0.120 0.758 ETKDGv3 23
ZHO C19 6.334 0.924 -0.384 ETKDGv3 24
ZHO C23 2.542 -1.098 1.832 ETKDGv3 25
ZHO C25 1.881 0.378 -0.027 ETKDGv3 26
ZHO N26 -0.686 0.851 -0.019 ETKDGv3 27
ZHO C27 -0.919 1.083 -1.448 ETKDGv3 28
ZHO C29 -2.484 -0.637 -2.310 ETKDGv3 29
ZHO C30 -2.762 -1.938 -2.954 ETKDGv3 30
ZHO C31 -1.751 -2.706 -3.378 ETKDGv3 31
ZHO C32 -0.357 -2.252 -3.206 ETKDGv3 32
ZHO C33 -0.101 -1.072 -2.627 ETKDGv3 33
ZHO C34 -1.658 0.351 0.922 ETKDGv3 34
ZHO C35 8.262 0.236 0.906 ETKDGv3 35
ZHO H49 6.392 -1.757 1.637 ETKDGv3 36
ZHO H48 7.147 -1.872 0.013 ETKDGv3 37
ZHO H52 1.044 -1.730 3.187 ETKDGv3 38
ZHO H36 -2.905 2.646 0.226 ETKDGv3 39
ZHO H37 -7.223 -1.178 1.750 ETKDGv3 40
ZHO H40 -6.237 5.115 -0.394 ETKDGv3 41
ZHO H38 -4.927 4.994 0.850 ETKDGv3 42
ZHO H39 -4.619 4.455 -0.850 ETKDGv3 43
ZHO H41 -5.107 -3.094 1.321 ETKDGv3 44
ZHO H43 -4.989 -2.489 3.028 ETKDGv3 45
ZHO H42 -6.502 -3.291 2.452 ETKDGv3 46
ZHO H45 4.415 1.289 -1.337 ETKDGv3 47
ZHO H44 4.525 1.818 0.386 ETKDGv3 48
ZHO H46 4.500 -2.356 0.437 ETKDGv3 49
ZHO H47 5.137 -1.708 -1.097 ETKDGv3 50
ZHO H50 6.656 0.463 -1.346 ETKDGv3 51
ZHO H51 6.752 1.955 -0.339 ETKDGv3 52
ZHO H53 3.327 -1.621 2.362 ETKDGv3 53
ZHO H54 2.079 0.960 -0.917 ETKDGv3 54
ZHO H55 -1.752 1.801 -1.591 ETKDGv3 55
ZHO H56 -0.024 1.560 -1.901 ETKDGv3 56
ZHO H57 -3.317 -0.037 -1.965 ETKDGv3 57
ZHO H58 -3.785 -2.269 -3.077 ETKDGv3 58
ZHO H59 -1.953 -3.660 -3.847 ETKDGv3 59
ZHO H60 0.458 -2.875 -3.551 ETKDGv3 60
ZHO H61 0.924 -0.747 -2.510 ETKDGv3 61
ZHO H63 8.788 -0.085 -0.021 ETKDGv3 62
ZHO H64 8.538 1.288 1.133 ETKDGv3 63
ZHO H62 8.612 -0.388 1.757 ETKDGv3 64
#