data_ZEM
#
_chem_comp.id ZEM
_chem_comp.name "20-OXO-PROTOPORPHYRIN IX CONTAINING ZN(II)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H32 N4 O5 Zn"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "ZN(II)-(20-OXO-PROTOPORPHYRIN IX)"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-18
_chem_comp.pdbx_modified_date 2023-09-23
_chem_comp.pdbx_ambiguous_flag Y
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 642.051
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ZEM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1ML2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ZEM ZN ZN ZN 0 0 N N N N N N 14.357 23.799 41.953 ? ? ? ZN ZEM 1
ZEM NA "N A" N 0 1 Y N N N N N 12.631 23.345 42.965 ? ? ? NA ZEM 2
ZEM NB "N B" N 0 1 N N N N N N 13.464 25.512 41.298 ? ? ? NB ZEM 3
ZEM NC "N C" N 0 1 N N S N N N 16.184 24.465 41.373 ? ? ? NC ZEM 4
ZEM ND "N D" N 0 1 N N N N N N 15.280 22.196 42.826 ? ? ? ND ZEM 5
ZEM C1A C1A C 0 1 Y N N N N N 12.434 22.240 43.772 ? ? ? C1A ZEM 6
ZEM CHA CHA C 0 1 N N N N N N 13.378 21.261 44.063 ? ? ? CHA ZEM 7
ZEM C4D C4D C 0 1 N N N N N N 14.688 21.227 43.605 ? ? ? C4D ZEM 8
ZEM C1B C1B C 0 1 N N N N N N 12.178 25.957 41.537 ? ? ? C1B ZEM 9
ZEM CHB CHB C 0 1 N N N N N N 11.234 25.288 42.337 ? ? ? CHB ZEM 10
ZEM OZ OZ O 0 1 N N N N N N 10.016 25.864 42.476 ? ? ? OZ ZEM 11
ZEM C4A C4A C 0 1 Y N N N N N 11.452 24.066 42.997 ? ? ? C4A ZEM 12
ZEM C1C C1C C 0 1 N N N N N N 16.424 25.635 40.680 ? ? ? C1C ZEM 13
ZEM CHC CHC C 0 1 N N N N N N 15.455 26.568 40.306 ? ? ? CHC ZEM 14
ZEM C4B C4B C 0 1 N N N N N N 14.089 26.512 40.584 ? ? ? C4B ZEM 15
ZEM C1D C1D C 0 1 N N N N N N 16.616 21.867 42.774 ? ? ? C1D ZEM 16
ZEM CHD CHD C 0 1 N N N N N N 17.618 22.660 42.223 ? ? ? CHD ZEM 17
ZEM C4C C4C C 0 1 N N N N N N 17.418 23.882 41.582 ? ? ? C4C ZEM 18
ZEM C2A C2A C 0 1 Y N N N N N 11.060 22.194 44.196 ? ? ? C2A ZEM 19
ZEM CAA CAA C 0 1 N N N N N N 10.423 21.052 44.978 ? ? ? CAA ZEM 20
ZEM C3A C3A C 0 1 Y N N N N N 10.457 23.313 43.736 ? ? ? C3A ZEM 21
ZEM CMA CMA C 0 1 N N N N N N 8.976 23.605 43.975 ? ? ? CMA ZEM 22
ZEM CBA CBA C 0 1 N N N N N N 10.638 21.142 46.478 ? ? ? CBA ZEM 23
ZEM CGA CGA C 0 1 N N N N N N 10.045 19.957 47.206 ? ? ? CGA ZEM 24
ZEM O1A O1A O 0 1 N N N N N N 8.841 19.679 47.000 ? ? ? O1A ZEM 25
ZEM O2A O2A O 0 1 N N N N N N 10.777 19.307 47.982 ? ? ? O2A ZEM 26
ZEM C2B C2B C 0 1 N N N N N N 11.942 27.169 40.770 ? ? ? C2B ZEM 27
ZEM CMB CMB C 0 1 N N N N N N 10.630 27.955 40.656 ? ? ? CMB ZEM 28
ZEM C3B C3B C 0 1 N N N N N N 13.108 27.481 40.149 ? ? ? C3B ZEM 29
ZEM CAB CAB C 0 1 N N N N N N 13.348 28.532 39.244 ? ? ? CAB ZEM 30
ZEM CBB CBB C 0 1 N N N N N N 12.449 28.959 38.190 ? ? ? CBB ZEM 31
ZEM C2C C2C C 0 1 N N N N N N 17.842 25.775 40.434 ? ? ? C2C ZEM 32
ZEM CMC CMC C 0 1 N N N N N N 18.489 26.931 39.661 ? ? ? CMC ZEM 33
ZEM C3C C3C C 0 1 N N N N N N 18.459 24.724 41.035 ? ? ? C3C ZEM 34
ZEM CAC CAC C 0 1 N N N N N N 19.840 24.474 41.146 ? ? ? CAC ZEM 35
ZEM CBC CBC C 0 1 N N N N N N 20.863 24.758 40.156 ? ? ? CBC ZEM 36
ZEM C2D C2D C 0 1 N N N N N N 16.782 20.505 43.231 ? ? ? C2D ZEM 37
ZEM CMD CMD C 0 1 N N N N N N 18.031 19.644 43.070 ? ? ? CMD ZEM 38
ZEM C3D C3D C 0 1 N N N N N N 15.590 20.108 43.738 ? ? ? C3D ZEM 39
ZEM CAD CAD C 0 1 N N N N N N 15.242 18.726 44.307 ? ? ? CAD ZEM 40
ZEM CBD CBD C 0 1 N N N N N N 15.324 18.725 45.832 ? ? ? CBD ZEM 41
ZEM CGD CGD C 0 1 N N N N N N 14.897 17.407 46.457 ? ? ? CGD ZEM 42
ZEM O1D O1D O 0 1 N N N N N N 14.734 17.370 47.696 ? ? ? O1D ZEM 43
ZEM O2D O2D O 0 1 N N N N N N 14.728 16.410 45.723 ? ? ? O2D ZEM 44
ZEM HHA HHA H 0 1 N N N N N N 13.063 20.452 44.705 ? ? ? HHA ZEM 45
ZEM HZ HZ H 0 1 N N N N N N 9.471 25.322 43.034 ? ? ? HZ ZEM 46
ZEM HHC HHC H 0 1 N N N N N N 15.799 27.423 39.742 ? ? ? HHC ZEM 47
ZEM HHD HHD H 0 1 N N N N N N 18.633 22.300 42.298 ? ? ? HHD ZEM 48
ZEM HAA1 HAA1 H 0 0 N N N N N N 9.341 21.059 44.782 ? ? ? HAA1 ZEM 49
ZEM HAA2 HAA2 H 0 0 N N N N N N 10.854 20.105 44.622 ? ? ? HAA2 ZEM 50
ZEM HMA1 HMA1 H 0 0 N N N N N N 8.380 23.170 43.160 ? ? ? HMA1 ZEM 51
ZEM HMA2 HMA2 H 0 0 N N N N N N 8.665 23.163 44.933 ? ? ? HMA2 ZEM 52
ZEM HMA3 HMA3 H 0 0 N N N N N N 8.817 24.693 44.005 ? ? ? HMA3 ZEM 53
ZEM HBA1 HBA1 H 0 0 N N N N N N 11.719 21.179 46.681 ? ? ? HBA1 ZEM 54
ZEM HBA2 HBA2 H 0 0 N N N N N N 10.163 22.062 46.850 ? ? ? HBA2 ZEM 55
ZEM H2A H2A H 0 1 N N N N N N 10.278 18.597 48.369 ? ? ? H2A ZEM 56
ZEM HMB1 HMB1 H 0 0 N N N N N N 10.779 28.825 40.000 ? ? ? HMB1 ZEM 57
ZEM HMB2 HMB2 H 0 0 N N N N N N 9.850 27.306 40.232 ? ? ? HMB2 ZEM 58
ZEM HMB3 HMB3 H 0 0 N N N N N N 10.320 28.297 41.654 ? ? ? HMB3 ZEM 59
ZEM HAB HAB H 0 1 N N N N N N 14.282 29.066 39.343 ? ? ? HAB ZEM 60
ZEM HBB1 HBB1 H 0 0 N N N N N N 12.725 29.780 37.544 ? ? ? HBB1 ZEM 61
ZEM HBB2 HBB2 H 0 0 N N N N N N 11.503 28.457 38.050 ? ? ? HBB2 ZEM 62
ZEM HMC1 HMC1 H 0 0 N N N N N N 19.579 26.785 39.626 ? ? ? HMC1 ZEM 63
ZEM HMC2 HMC2 H 0 0 N N N N N N 18.089 26.956 38.637 ? ? ? HMC2 ZEM 64
ZEM HMC3 HMC3 H 0 0 N N N N N N 18.263 27.882 40.166 ? ? ? HMC3 ZEM 65
ZEM HAC HAC H 0 1 N N N N N N 20.175 24.022 42.068 ? ? ? HAC ZEM 66
ZEM HBC1 HBC1 H 0 0 N N N N N N 21.895 24.517 40.362 ? ? ? HBC1 ZEM 67
ZEM HBC2 HBC2 H 0 0 N N N N N N 20.592 25.210 39.213 ? ? ? HBC2 ZEM 68
ZEM HMD1 HMD1 H 0 0 N N N N N N 17.855 18.655 43.518 ? ? ? HMD1 ZEM 69
ZEM HMD2 HMD2 H 0 0 N N N N N N 18.260 19.526 42.000 ? ? ? HMD2 ZEM 70
ZEM HMD3 HMD3 H 0 0 N N N N N N 18.879 20.130 43.575 ? ? ? HMD3 ZEM 71
ZEM HAD1 HAD1 H 0 0 N N N N N N 14.220 18.458 44.002 ? ? ? HAD1 ZEM 72
ZEM HAD2 HAD2 H 0 0 N N N N N N 15.950 17.984 43.908 ? ? ? HAD2 ZEM 73
ZEM HBD1 HBD1 H 0 0 N N N N N N 16.364 18.930 46.126 ? ? ? HBD1 ZEM 74
ZEM HBD2 HBD2 H 0 0 N N N N N N 14.671 19.522 46.217 ? ? ? HBD2 ZEM 75
ZEM H2D H2D H 0 1 N N N N N N 14.468 15.666 46.254 ? ? ? H2D ZEM 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ZEM ZN NA SING N N 1
ZEM ZN NB SING N N 2
ZEM ZN NC SING N N 3
ZEM ZN ND SING N N 4
ZEM NA C1A SING Y N 5
ZEM NA C4A SING Y N 6
ZEM NB C1B SING N N 7
ZEM NB C4B DOUB N N 8
ZEM NC C1C SING N N 9
ZEM NC C4C SING N N 10
ZEM ND C4D SING N N 11
ZEM ND C1D DOUB N N 12
ZEM C1A CHA SING N N 13
ZEM C1A C2A DOUB Y N 14
ZEM CHA C4D DOUB N N 15
ZEM CHA HHA SING N N 16
ZEM C4D C3D SING N N 17
ZEM C1B CHB DOUB N N 18
ZEM C1B C2B SING N N 19
ZEM CHB OZ SING N N 20
ZEM CHB C4A SING N N 21
ZEM OZ HZ SING N N 22
ZEM C4A C3A DOUB Y N 23
ZEM C1C CHC DOUB N N 24
ZEM C1C C2C SING N N 25
ZEM CHC C4B SING N N 26
ZEM CHC HHC SING N N 27
ZEM C4B C3B SING N N 28
ZEM C1D CHD SING N N 29
ZEM C1D C2D SING N N 30
ZEM CHD C4C DOUB N N 31
ZEM CHD HHD SING N N 32
ZEM C4C C3C SING N N 33
ZEM C2A CAA SING N N 34
ZEM C2A C3A SING Y N 35
ZEM CAA CBA SING N N 36
ZEM CAA HAA1 SING N N 37
ZEM CAA HAA2 SING N N 38
ZEM C3A CMA SING N N 39
ZEM CMA HMA1 SING N N 40
ZEM CMA HMA2 SING N N 41
ZEM CMA HMA3 SING N N 42
ZEM CBA CGA SING N N 43
ZEM CBA HBA1 SING N N 44
ZEM CBA HBA2 SING N N 45
ZEM CGA O1A DOUB N N 46
ZEM CGA O2A SING N N 47
ZEM O2A H2A SING N N 48
ZEM C2B CMB SING N N 49
ZEM C2B C3B DOUB N N 50
ZEM CMB HMB1 SING N N 51
ZEM CMB HMB2 SING N N 52
ZEM CMB HMB3 SING N N 53
ZEM C3B CAB SING N N 54
ZEM CAB CBB DOUB N N 55
ZEM CAB HAB SING N N 56
ZEM CBB HBB1 SING N N 57
ZEM CBB HBB2 SING N N 58
ZEM C2C CMC SING N N 59
ZEM C2C C3C DOUB N N 60
ZEM CMC HMC1 SING N N 61
ZEM CMC HMC2 SING N N 62
ZEM CMC HMC3 SING N N 63
ZEM C3C CAC SING N N 64
ZEM CAC CBC DOUB N N 65
ZEM CAC HAC SING N N 66
ZEM CBC HBC1 SING N N 67
ZEM CBC HBC2 SING N N 68
ZEM C2D CMD SING N N 69
ZEM C2D C3D DOUB N N 70
ZEM CMD HMD1 SING N N 71
ZEM CMD HMD2 SING N N 72
ZEM CMD HMD3 SING N N 73
ZEM C3D CAD SING N N 74
ZEM CAD CBD SING N N 75
ZEM CAD HAD1 SING N N 76
ZEM CAD HAD2 SING N N 77
ZEM CBD CGD SING N N 78
ZEM CBD HBD1 SING N N 79
ZEM CBD HBD2 SING N N 80
ZEM CGD O1D DOUB N N 81
ZEM CGD O2D SING N N 82
ZEM O2D H2D SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ZEM InChI InChI 1.06 InChI=1S/C34H34N4O5.Zn/c1-7-20-16(3)24-14-27-21(8-2)18(5)32(37-27)34(43)33-19(6)23(10-12-31(41)42)29(38-33)15-28-22(9-11-30(39)40)17(4)25(36-28)13-26(20)35-24;/h7-8,13-15H,1-2,9-12H2,3-6H3,(H5,35,36,37,38,39,40,41,42,43);/q;+2/p-2/b24-14-,25-13-,26-13-,27-14-,28-15-,29-15-,34-32+,34-33+;
ZEM InChIKey InChI 1.06 GKGQUBKNYNPVCL-GYHFSKQYSA-L
ZEM SMILES_CANONICAL CACTVS 3.385 CC1=C(CCC(O)=O)C2=Cc3n4[Zn][N@]5C(=CC6=NC(=C(O)c4c(C)c3CCC(O)=O)C(=C6C=C)C)C(=C(C=C)C5=CC1=N2)C
ZEM SMILES CACTVS 3.385 CC1=C(CCC(O)=O)C2=Cc3n4[Zn][N]5C(=CC6=NC(=C(O)c4c(C)c3CCC(O)=O)C(=C6C=C)C)C(=C(C=C)C5=CC1=N2)C
ZEM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1c(c2n3c1C(=C4C(=C(C5=[N]4[Zn]36[N]7=C(C=C8N6C(=C5)C(=C8C=C)C)C(=C(C7=C2)CCC(=O)O)C)C=C)C)O)CCC(=O)O
ZEM SMILES "OpenEye OEToolkits" 2.0.7 Cc1c(c2n3c1C(=C4C(=C(C5=[N]4[Zn]36[N]7=C(C=C8N6C(=C5)C(=C8C=C)C)C(=C(C7=C2)CCC(=O)O)C)C=C)C)O)CCC(=O)O
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id ZEM
_pdbx_chem_comp_synonyms.name "ZN(II)-(20-OXO-PROTOPORPHYRIN IX)"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ZEM 'Modify synonyms' 2021-03-01 PDBE
ZEM 'Modify descriptor' 2023-09-23 RCSB
#
_pdbe_chem_comp_synonyms.comp_id ZEM
_pdbe_chem_comp_synonyms.name 'ZN(II)-(20-OXO-PROTOPORPHYRIN IX)'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ZEM ZN Zn 0.000 0.000 1
ZEM NA N -1.518 1.556 2
ZEM NB N 1.556 1.556 3
ZEM NC N 1.556 -1.556 4
ZEM ND N -1.518 -1.556 5
ZEM C1A C -2.999 1.291 6
ZEM CHA C -3.758 0.000 7
ZEM C4D C -2.999 -1.291 8
ZEM C1B C 1.329 3.037 9
ZEM CHB C 0.000 3.796 10
ZEM OZ O -0.012 5.294 11
ZEM C4A C -1.291 3.037 12
ZEM C1C C 3.037 -1.291 13
ZEM CHC C 3.796 0.000 14
ZEM C4B C 3.037 1.291 15
ZEM C1D C -1.291 -3.037 16
ZEM CHD C 0.000 -3.796 17
ZEM C4C C 1.329 -3.037 18
ZEM C2A C -3.682 2.657 19
ZEM CAA C -5.190 2.908 20
ZEM C3A C -2.619 3.720 21
ZEM CMA C -2.855 5.205 22
ZEM CBA C -5.717 4.312 23
ZEM CGA C -7.196 4.558 24
ZEM O1A O -8.149 3.399 25
ZEM O2A O -7.723 5.962 26
ZEM C2B C 2.658 3.720 27
ZEM CMB C 2.886 5.197 28
ZEM C3B C 3.758 2.657 29
ZEM CAB C 5.265 2.923 30
ZEM CBB C 6.230 1.774 31
ZEM C2C C 3.758 -2.657 32
ZEM CMC C 5.288 -2.877 33
ZEM C3C C 2.658 -3.720 34
ZEM CAC C 2.871 -5.236 35
ZEM CBC C 1.689 -6.159 36
ZEM C2D C -2.619 -3.720 37
ZEM CMD C -2.848 -5.197 38
ZEM C3D C -3.682 -2.657 39
ZEM CAD C -5.167 -2.892 40
ZEM CBD C -5.705 -4.293 41
ZEM CGD C -7.186 -4.527 42
ZEM O1D O -8.130 -3.362 43
ZEM O2D O -7.724 -5.928 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ZEM ZN NA SINGLE NONE 1
ZEM NB ZN DATIVE NONE 2
ZEM ZN NC SINGLE NONE 3
ZEM ND ZN DATIVE NONE 4
ZEM NA C1A SINGLE NONE 5
ZEM NA C4A SINGLE NONE 6
ZEM NB C1B SINGLE ENDUPRIGHT 7
ZEM NB C4B DOUBLE NONE 8
ZEM NC C1C SINGLE ENDUPRIGHT 9
ZEM NC C4C SINGLE ENDUPRIGHT 10
ZEM ND C4D SINGLE ENDUPRIGHT 11
ZEM ND C1D DOUBLE NONE 12
ZEM C1A CHA SINGLE ENDUPRIGHT 13
ZEM C1A C2A DOUBLE NONE 14
ZEM CHA C4D DOUBLE NONE 15
ZEM C4D C3D SINGLE ENDUPRIGHT 16
ZEM C1B CHB DOUBLE NONE 17
ZEM C1B C2B SINGLE ENDUPRIGHT 18
ZEM CHB OZ SINGLE ENDUPRIGHT 19
ZEM CHB C4A SINGLE ENDDOWNRIGHT 20
ZEM C4A C3A DOUBLE NONE 21
ZEM C1C CHC DOUBLE NONE 22
ZEM C1C C2C SINGLE ENDUPRIGHT 23
ZEM CHC C4B SINGLE ENDDOWNRIGHT 24
ZEM C4B C3B SINGLE NONE 25
ZEM C1D CHD SINGLE ENDUPRIGHT 26
ZEM C1D C2D SINGLE NONE 27
ZEM CHD C4C DOUBLE NONE 28
ZEM C4C C3C SINGLE ENDUPRIGHT 29
ZEM C2A CAA SINGLE NONE 30
ZEM C2A C3A SINGLE NONE 31
ZEM CAA CBA SINGLE NONE 32
ZEM C3A CMA SINGLE NONE 33
ZEM CBA CGA SINGLE NONE 34
ZEM CGA O1A DOUBLE NONE 35
ZEM CGA O2A SINGLE NONE 36
ZEM C2B CMB SINGLE NONE 37
ZEM C2B C3B DOUBLE NONE 38
ZEM C3B CAB SINGLE NONE 39
ZEM CAB CBB DOUBLE NONE 40
ZEM C2C CMC SINGLE NONE 41
ZEM C2C C3C DOUBLE NONE 42
ZEM C3C CAC SINGLE NONE 43
ZEM CAC CBC DOUBLE NONE 44
ZEM C2D CMD SINGLE NONE 45
ZEM C2D C3D DOUBLE NONE 46
ZEM C3D CAD SINGLE NONE 47
ZEM CAD CBD SINGLE NONE 48
ZEM CBD CGD SINGLE NONE 49
ZEM CGD O1D DOUBLE NONE 50
ZEM CGD O2D SINGLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ZEM MurckoScaffold S1 scaffold 'C1=C/C2=C/c3ccc4[n]3[Zn@SP2]35<-[N]2=C1/C=c1/cc/c([n]13)=C/C1=[N]->5/C(=C\4)C=C1' 'InChI=1S/C20H12N4.Zn/c1-2-14-10-16-5-6-18(23-16)12-20-8-7-19(24-20)11-17-4-3-15(22-17)9-13(1)21-14;/h1-12H;/q-2;+2/b13-9-,14-10-,15-9?,16-10?,17-11-,18-12?,19-11?,20-12?;' AUIPNWPUEFZMSU-PJJOWFBCSA-N
ZEM porphin-like F1 fragment C1~C~C2~C~C3~C~C~C(~C~C4~C~C~C(~C~C5~C~C~C(~C~C~1~N~2)~N~5)~N~4)~N~3 ? ?
ZEM pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ZEM ZN S1 1
ZEM NA S1 1
ZEM NB S1 1
ZEM NC S1 1
ZEM ND S1 1
ZEM C1A S1 1
ZEM CHA S1 1
ZEM C4D S1 1
ZEM C1B S1 1
ZEM CHB S1 1
ZEM C4A S1 1
ZEM C1C S1 1
ZEM CHC S1 1
ZEM C4B S1 1
ZEM C1D S1 1
ZEM CHD S1 1
ZEM C4C S1 1
ZEM C2A S1 1
ZEM C3A S1 1
ZEM C2B S1 1
ZEM C3B S1 1
ZEM C2C S1 1
ZEM C3C S1 1
ZEM C2D S1 1
ZEM C3D S1 1
ZEM C2A F1 1
ZEM C3A F1 1
ZEM C4A F1 1
ZEM CHB F1 1
ZEM C1B F1 1
ZEM NB F1 1
ZEM C4B F1 1
ZEM C3B F1 1
ZEM C2B F1 1
ZEM CHC F1 1
ZEM C1C F1 1
ZEM NC F1 1
ZEM C4C F1 1
ZEM CHD F1 1
ZEM C1D F1 1
ZEM ND F1 1
ZEM C4D F1 1
ZEM CHA F1 1
ZEM C1A F1 1
ZEM NA F1 1
ZEM C3D F1 1
ZEM C2D F1 1
ZEM C3C F1 1
ZEM C2C F1 1
ZEM C1A F2 1
ZEM C2A F2 1
ZEM C3A F2 1
ZEM C4A F2 1
ZEM NA F2 1
ZEM C1C F2 2
ZEM C2C F2 2
ZEM C3C F2 2
ZEM C4C F2 2
ZEM NC F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id ZEM
_pdbe_chem_comp_rdkit_properties.exactmw 640.166
_pdbe_chem_comp_rdkit_properties.amw 642.043
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.235
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 6
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 302.014
_pdbe_chem_comp_rdkit_properties.tpsa 116.490
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.096
_pdbe_chem_comp_rdkit_properties.CrippenMR 166.844
_pdbe_chem_comp_rdkit_properties.chi0v 24.504
_pdbe_chem_comp_rdkit_properties.chi1v 17.882
_pdbe_chem_comp_rdkit_properties.chi2v 21.149
_pdbe_chem_comp_rdkit_properties.chi3v 21.149
_pdbe_chem_comp_rdkit_properties.chi4v 22.368
_pdbe_chem_comp_rdkit_properties.chi0n 53.537
_pdbe_chem_comp_rdkit_properties.chi1n 28.299
_pdbe_chem_comp_rdkit_properties.chi2n 8.721
_pdbe_chem_comp_rdkit_properties.chi3n 8.721
_pdbe_chem_comp_rdkit_properties.chi4n 7.434
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.557
_pdbe_chem_comp_rdkit_properties.kappa1 9.473
_pdbe_chem_comp_rdkit_properties.kappa2 8.540
_pdbe_chem_comp_rdkit_properties.kappa3 2.793
_pdbe_chem_comp_rdkit_properties.Phi 1.839
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ZEM ZN 0.852 2.447 -1.211 ETKDGv3 1
ZEM NA 0.589 1.412 -1.390 ETKDGv3 2
ZEM NB -2.049 1.869 -0.328 ETKDGv3 3
ZEM NC -1.961 -0.800 0.607 ETKDGv3 4
ZEM ND 0.549 -1.316 -0.488 ETKDGv3 5
ZEM C1A 1.976 1.122 -1.235 ETKDGv3 6
ZEM CHA 2.533 -0.228 -1.403 ETKDGv3 7
ZEM C4D 1.837 -1.326 -1.101 ETKDGv3 8
ZEM C1B -1.897 3.107 -1.023 ETKDGv3 9
ZEM CHB -0.719 3.593 -1.441 ETKDGv3 10
ZEM OZ -0.675 4.818 -2.107 ETKDGv3 11
ZEM C4A 0.526 2.827 -1.232 ETKDGv3 12
ZEM C1C -3.266 -0.446 1.067 ETKDGv3 13
ZEM CHC -3.881 0.710 0.793 ETKDGv3 14
ZEM C4B -3.310 1.778 -0.045 ETKDGv3 15
ZEM C1D 0.311 -2.550 -0.174 ETKDGv3 16
ZEM CHD -0.864 -2.985 0.600 ETKDGv3 17
ZEM C4C -1.853 -2.172 0.991 ETKDGv3 18
ZEM C2A 2.678 2.224 -0.976 ETKDGv3 19
ZEM CAA 4.147 2.314 -0.643 ETKDGv3 20
ZEM C3A 1.727 3.333 -0.942 ETKDGv3 21
ZEM CMA 2.068 4.771 -0.678 ETKDGv3 22
ZEM CBA 4.392 2.243 0.870 ETKDGv3 23
ZEM CGA 4.166 0.863 1.408 ETKDGv3 24
ZEM O1A 5.128 0.055 1.492 ETKDGv3 25
ZEM O2A 2.888 0.466 1.789 ETKDGv3 26
ZEM C2B -3.208 3.751 -1.147 ETKDGv3 27
ZEM CMB -3.524 5.045 -1.846 ETKDGv3 28
ZEM C3B -4.074 2.930 -0.560 ETKDGv3 29
ZEM CAB -5.532 3.150 -0.464 ETKDGv3 30
ZEM CBB -6.412 2.171 -0.659 ETKDGv3 31
ZEM C2C -3.883 -1.563 1.793 ETKDGv3 32
ZEM CMC -5.248 -1.559 2.425 ETKDGv3 33
ZEM C3C -3.045 -2.595 1.747 ETKDGv3 34
ZEM CAC -3.308 -3.923 2.345 ETKDGv3 35
ZEM CBC -2.382 -4.590 3.028 ETKDGv3 36
ZEM C2D 1.392 -3.451 -0.606 ETKDGv3 37
ZEM CMD 1.461 -4.924 -0.317 ETKDGv3 38
ZEM C3D 2.335 -2.699 -1.172 ETKDGv3 39
ZEM CAD 3.691 -3.140 -1.670 ETKDGv3 40
ZEM CBD 4.786 -2.941 -0.615 ETKDGv3 41
ZEM CGD 4.572 -3.814 0.582 ETKDGv3 42
ZEM O1D 4.074 -3.333 1.635 ETKDGv3 43
ZEM O2D 4.890 -5.167 0.517 ETKDGv3 44
ZEM HHA 3.550 -0.328 -1.754 ETKDGv3 45
ZEM HZ 0.163 5.154 -2.563 ETKDGv3 46
ZEM HHC -4.882 0.862 1.170 ETKDGv3 47
ZEM HHD -0.921 -4.032 0.855 ETKDGv3 48
ZEM HAA1 4.729 1.526 -1.163 ETKDGv3 49
ZEM HAA2 4.534 3.285 -1.019 ETKDGv3 50
ZEM HMA1 2.386 5.258 -1.623 ETKDGv3 51
ZEM HMA2 2.898 4.840 0.053 ETKDGv3 52
ZEM HMA3 1.198 5.311 -0.250 ETKDGv3 53
ZEM HBA1 3.730 2.959 1.404 ETKDGv3 54
ZEM HBA2 5.441 2.545 1.078 ETKDGv3 55
ZEM H2A 2.715 -0.473 2.127 ETKDGv3 56
ZEM HMB1 -3.157 5.000 -2.892 ETKDGv3 57
ZEM HMB2 -4.613 5.247 -1.880 ETKDGv3 58
ZEM HMB3 -3.026 5.883 -1.315 ETKDGv3 59
ZEM HAB -5.905 4.152 -0.290 ETKDGv3 60
ZEM HBB1 -6.093 1.167 -0.905 ETKDGv3 61
ZEM HBB2 -7.473 2.380 -0.605 ETKDGv3 62
ZEM HMC1 -6.017 -1.729 1.643 ETKDGv3 63
ZEM HMC2 -5.436 -0.585 2.920 ETKDGv3 64
ZEM HMC3 -5.337 -2.346 3.203 ETKDGv3 65
ZEM HAC -4.309 -4.332 2.295 ETKDGv3 66
ZEM HBC1 -2.625 -5.543 3.479 ETKDGv3 67
ZEM HBC2 -1.388 -4.185 3.175 ETKDGv3 68
ZEM HMD1 0.466 -5.386 -0.479 ETKDGv3 69
ZEM HMD2 1.765 -5.079 0.739 ETKDGv3 70
ZEM HMD3 2.176 -5.447 -0.981 ETKDGv3 71
ZEM HAD1 3.951 -2.539 -2.567 ETKDGv3 72
ZEM HAD2 3.677 -4.196 -2.008 ETKDGv3 73
ZEM HBD1 4.825 -1.875 -0.306 ETKDGv3 74
ZEM HBD2 5.769 -3.192 -1.066 ETKDGv3 75
ZEM H2D 4.734 -5.775 1.312 ETKDGv3 76
#